Factsheet for TraesCS3B01G258300.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
ChloroP:	plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1B01G473400.1
TraesCS1D01G445700.1
TraesCS3A01G210100.2
TraesCS3B01G240600.1
TraesCSU01G002300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G80670.1	TraesCS1B01G473400.1	AT4G05420.1	18223036
AT1G80670.1	TraesCS1D01G445700.1	AT4G05420.1	18223036
AT1G80670.1	TraesCS3A01G210100.2	AT4G05420.1	18223036
AT1G80670.1	TraesCS3B01G240600.1	AT4G05420.1	18223036
AT1G80670.1	TraesCSU01G002300.1	AT4G05420.1	18223036

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G224200.1	Wheat	plastid	99.42	99.42
TraesCS3A01G226200.1	Wheat	plastid	99.42	99.42
Os01t0635400-01	Rice	cytosol, plastid	90.14	90.41
EES01141	Sorghum	plastid	87.83	88.08
Zm00001d044116_P001	Maize	cytosol, plastid	85.51	85.51
HORVU3Hr1G056400.2	Barley	cytosol, plastid	96.23	83.21
TraesCS1B01G041300.1	Wheat	plastid	80.87	81.34
VIT_12s0055g00900.t01	Wine grape	cytosol, plastid	76.81	75.71
VIT_09s0002g09150.t01	Wine grape	cytosol, plastid	75.65	75.65
Solyc10g047000.1.1	Tomato	nucleus	76.23	75.14
KRH71020	Soybean	cytosol, plastid	74.49	74.06
KRH75181	Soybean	nucleus	74.49	74.06
AT1G80670.1	Thale cress	cytosol, plastid	74.2	73.35
Bra003577.1-P	Field mustard	cytosol	58.55	73.19
CDY53220	Canola	plastid	73.33	73.12
CDY66129	Canola	plastid	73.33	73.12
Bra008447.1-P	Field mustard	plastid	73.33	73.12
CDX67958	Canola	cytosol, plastid	72.75	72.54
GSMUA_Achr6P30360_001	Banana	cytosol, plastid	77.68	72.43
GSMUA_Achr6P30400_001	Banana	cytosol, plastid	77.68	72.43
Bra035162.1-P	Field mustard	plastid	72.46	71.84
CDX87331	Canola	plastid	72.46	71.84
CDY39955	Canola	plastid	72.17	71.55
CDX79362	Canola	cytosol, plastid	68.41	70.24
AT1G15850.1	Thale cress	plastid	24.35	60.0
TraesCS4B01G246100.1	Wheat	cytosol	30.14	33.88
TraesCS2B01G212800.1	Wheat	cytosol	31.59	31.41
TraesCS5B01G401600.1	Wheat	mitochondrion	24.06	25.78

Protein Annotations

Gene3D:2.130.10.10	MapMan:23.5.1.1.1.10	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	PFAM:PF00400	PRINTS:PR00320	PFscan:PS50082
PFscan:PS50294	PANTHER:PTHR10971	PANTHER:PTHR10971:SF16	SMART:SM00320	SUPFAM:SSF50978	EnsemblPlantsGene:TraesCS3B01G258300
EnsemblPlants:TraesCS3B01G258300.1	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg

Description

No Description!

Coordinates

chr3B:+:416124516..416129597

Molecular Weight (calculated)

37777.3 Da

IEP (calculated)

8.421

GRAVY (calculated)

-0.407

Length

345 amino acids

Sequence
(BLAST)

001: MASFNAAGAG AANPNPNKSL EVNPAPGDSV SSLSFSPKAN HLIATSWDNQ VRCWEVQPGG QCQAKASISH DQPVLCSAWK DDGTTVFSGG CDKVVKMWPL
101: LSGGQATAFS GHEAPVKELA WIPQMSLLVS GSWDKTLRYW DIRQPNPAHV QQLPERCYAL SLSYPLMAVG TADRNVVIFN LQNPQAEFKR IVSPLKFQTR
201: CIAAFPDQQG FLVGSIEGRV GVHHVDDSNQ SKNFTFKCHR EGNDIFSVNS LNFHPVHHTF ATAGSDGGFN FWDKDSKQRL KAFSKCPSPI TCSTFNQDGS
301: IFAYAVCYDW SKGAEKHNPS TAKTNIFLHS VQESDVKGKP RTGKK

Best Arabidopsis Sequence Match ( AT1G80670.1 )
(BLAST)

001: MATFGAPATA NSNPNKSYEV TPSPADSISS LSFSPRADIL VATSWDNQVR CWEISRSGAS LASAPKASIS HDQPVLCSAW KDDGTTVFSG GCDKQAKMWP
101: LLSGGQPVTV AMHEGPIAAM AWIPGMNLLA TGSWDKTLKY WDTRQQNPVH TQQLPDKCYT LSVKHPLMVV GTADRNLIVF NLQNPQTEFK RIQSPLKYQT
201: RCVTAFPDQQ GFLVGSIEGR VGVHHLDDSQ QSKNFTFKCH RDGNDIYSVN SLNFHPVHGT FATAGSDGAF NFWDKDSKQR LKAMSRCNQP IPCSSFNHDG
301: SIYAYAACYD WSKGAENHNP ATAKSSIFLH LPQESEVKAK PRVGATGRK

Arabidopsis Description

RAE1Protein RAE1 [Source:UniProtKB/Swiss-Prot;Acc:Q38942]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.