Factsheet for Solyc10g047000.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 5
cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
EpiLoc:	cytosol
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g021650.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G80670.1	Solyc02g021650.2.1	AT4G05420.1	18223036

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_12s0055g00900.t01	Wine grape	cytosol, plastid	84.86	84.86
KRH75181	Soybean	nucleus	82.86	83.57
KRH71020	Soybean	cytosol, plastid	82.86	83.57
VIT_09s0002g09150.t01	Wine grape	cytosol, plastid	82.0	83.19
Os08t0176800-01	Rice	plastid	78.86	80.7
Bra008447.1-P	Field mustard	plastid	77.43	78.32
CDY53220	Canola	plastid	77.43	78.32
CDY66129	Canola	plastid	77.43	78.32
TraesCS1D01G034200.1	Wheat	plastid	76.57	78.13
TraesCS1B01G041300.1	Wheat	plastid	76.57	78.13
Bra003577.1-P	Field mustard	cytosol	61.43	77.9
TraesCS1A01G033000.1	Wheat	plastid	76.29	77.84
AT1G80670.1	Thale cress	cytosol, plastid	77.14	77.36
CDX67958	Canola	cytosol, plastid	76.29	77.17
Bra035162.1-P	Field mustard	plastid	76.57	77.01
CDX87331	Canola	plastid	76.57	77.01
CDY39955	Canola	plastid	76.29	76.72
TraesCS3A01G226200.1	Wheat	plastid	75.14	76.23
TraesCS3B01G258300.1	Wheat	plastid	75.14	76.23
Zm00001d044116_P001	Maize	cytosol, plastid	74.86	75.94
TraesCS3D01G224200.1	Wheat	plastid	74.57	75.65
Os01t0635400-01	Rice	cytosol, plastid	74.29	75.58
EES01141	Sorghum	plastid	73.71	75.0
CDX79362	Canola	cytosol, plastid	71.43	74.4
GSMUA_Achr6P30360_001	Banana	cytosol, plastid	78.29	74.05
KXG24577	Sorghum	cytosol, plastid	75.71	73.82
GSMUA_Achr6P30400_001	Banana	cytosol, plastid	78.0	73.78
HORVU1Hr1G004960.1	Barley	plastid	76.86	65.77
HORVU3Hr1G056400.2	Barley	cytosol, plastid	74.57	65.41
AT1G15850.1	Thale cress	plastid	25.14	62.86
Solyc01g107160.2.1	Tomato	nucleus	31.43	32.35
Solyc05g012720.2.1	Tomato	nucleus	20.29	25.54

Protein Annotations

Gene3D:2.130.10.10	MapMan:23.5.1.1.1.10	InterPro:G-protein_beta_WD-40_rep	GO:GO:0000972	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005635	GO:GO:0005643	GO:GO:0006405	GO:GO:0006606	GO:GO:0006810
GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	GO:GO:0043130	InterPro:IPR001680	InterPro:IPR015943
InterPro:IPR017986	UniProt:K4CZW5	PFAM:PF00400	PRINTS:PR00320	PFscan:PS50082	PFscan:PS50294
PANTHER:PTHR10971	PANTHER:PTHR10971:SF16	SMART:SM00320	SUPFAM:SSF50978	EnsemblPlantsGene:Solyc10g047000.1	EnsemblPlants:Solyc10g047000.1.1
UniParc:UPI0002769BC3	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	:

Description

No Description!

Coordinates

chr10:-:39131981..39141285

Molecular Weight (calculated)

38559.4 Da

IEP (calculated)

8.411

GRAVY (calculated)

-0.445

Length

350 amino acids

Sequence
(BLAST)

001: MSLFGSGATA AANTNPNKSV EVQQPPSDSV SSLCFSPKAN LLVASSWDNQ VRCWEVMGSG TNVGAVPKAS ISHEQPVLCS TWKDDGTTVF SGGCDKQVKM
101: WPLSGSQPVT VGMHDAPVKE LAWIPEMSLL VTGSWDKTLR YWDLRQPNPA HVQQLPERCY ALTVKHPLMV AATADRNLIV FNLQNPQTEF KRIVSPLKYQ
201: TRCLAAFPDK QGFLVGSIEG RVGVHHLDDA QQSKNFTFKC HREGNEIYSV NSLNFHPTHG TFATAGSDGS FNFWDKDSKQ RLKAMSRCSQ PIPCSAFNND
301: GSIYAYAVCY DWSKGAENHN PSTAKTNIYL HFPQDSEVKG KPRIGTSGRK

Best Arabidopsis Sequence Match ( AT1G80670.1 )
(BLAST)

001: MATFGAPATA NSNPNKSYEV TPSPADSISS LSFSPRADIL VATSWDNQVR CWEISRSGAS LASAPKASIS HDQPVLCSAW KDDGTTVFSG GCDKQAKMWP
101: LLSGGQPVTV AMHEGPIAAM AWIPGMNLLA TGSWDKTLKY WDTRQQNPVH TQQLPDKCYT LSVKHPLMVV GTADRNLIVF NLQNPQTEFK RIQSPLKYQT
201: RCVTAFPDQQ GFLVGSIEGR VGVHHLDDSQ QSKNFTFKCH RDGNDIYSVN SLNFHPVHGT FATAGSDGAF NFWDKDSKQR LKAMSRCNQP IPCSSFNHDG
301: SIYAYAACYD WSKGAENHNP ATAKSSIFLH LPQESEVKAK PRVGATGRK

Arabidopsis Description

RAE1Protein RAE1 [Source:UniProtKB/Swiss-Prot;Acc:Q38942]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.