Factsheet for Os08t0176800-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
cytosol 3
plastid 4

Predictors

GFP

MS/MS

Papers

plastid: 27992503

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G034200.1	Wheat	plastid	92.98	92.71
TraesCS1B01G041300.1	Wheat	plastid	92.69	92.42
TraesCS1A01G033000.1	Wheat	plastid	92.69	92.42
KXG24577	Sorghum	cytosol, plastid	92.11	87.74
VIT_12s0055g00900.t01	Wine grape	cytosol, plastid	83.92	82.0
VIT_09s0002g09150.t01	Wine grape	cytosol, plastid	82.46	81.74
KRH71020	Soybean	cytosol, plastid	82.16	80.98
KRH75181	Soybean	nucleus	82.16	80.98
Os01t0635400-01	Rice	cytosol, plastid	80.7	80.23
Bra003577.1-P	Field mustard	cytosol	64.62	80.07
CDY53220	Canola	plastid	80.99	80.06
CDY66129	Canola	plastid	80.99	80.06
Bra008447.1-P	Field mustard	plastid	80.99	80.06
Solyc10g047000.1.1	Tomato	nucleus	80.7	78.86
AT1G80670.1	Thale cress	cytosol, plastid	80.41	78.8
GSMUA_Achr6P30360_001	Banana	cytosol, plastid	85.09	78.65
CDX67958	Canola	cytosol, plastid	79.53	78.61
CDX87331	Canola	plastid	79.24	77.87
Bra035162.1-P	Field mustard	plastid	79.24	77.87
CDY39955	Canola	plastid	79.24	77.87
GSMUA_Achr6P30400_001	Banana	cytosol, plastid	84.21	77.84
HORVU1Hr1G004960.1	Barley	plastid	91.52	76.53
CDX79362	Canola	cytosol, plastid	74.85	76.19
AT1G15850.1	Thale cress	plastid	28.07	68.57
Os03t0448600-01	Rice	cytosol	33.04	32.94
Os07t0588500-00	Rice	cytosol	33.04	31.04
Os03t0758700-01	Rice	endoplasmic reticulum, plasma membrane	18.71	21.77
Os07t0588600-01	Rice	nucleus	13.45	20.91
Os07t0588700-00	Rice	cytosol	10.82	16.37

Protein Annotations

Gene3D:2.130.10.10	MapMan:23.5.1.1.1.10	EntrezGene:4344798	EMBL:AK111670	ProteinID:BAD03038.1	ProteinID:BAD03234.1
ProteinID:BAF23033.1	ProteinID:BAT04073.1	ProteinID:EAZ41702.1	InterPro:G-protein_beta_WD-40_rep	GO:GO:0000972	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005635	GO:GO:0005643	GO:GO:0006405	GO:GO:0006606
GO:GO:0006810	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	GO:GO:0043130	InterPro:IPR001680
InterPro:IPR015943	InterPro:IPR017986	EnsemblPlantsGene:Os08g0176800	EnsemblPlants:Os08t0176800-01	PFAM:PF00400	PRINTS:PR00320
PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR10971	PANTHER:PTHR10971:SF16	UniProt:Q6ZBS9	SMART:SM00320
SUPFAM:SSF50978	UniParc:UPI0000225FC1	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf
RefSeq:XP_015651125.1	RefSeq:XP_015651126.1	:	:	:	:

Description

OsWD40-156Similar to mRNA-associated protein mrnp 41 (Rae1 protein homolog). (Os08t0176800-01)

Coordinates

chr8:-:4496687..4502242

Molecular Weight (calculated)

38008.8 Da

IEP (calculated)

8.330

GRAVY (calculated)

-0.419

Length

342 amino acids

Sequence
(BLAST)

001: MATLGLAPNM NPNKSFEVLP NPGDSVSSLS FSPKSNLLVA TSWDNQVRCW EIVGGSSQPK ASISHDQPVL CSAWKDDGTT VFSGGCDKQV KMWPLLSGGQ
101: AQTVAMHDAP VKEIAWIPQM NLLVSGSWDK TLRYWDTRQS NPVHVQQLPE RCYALTVNYP LMIVGTADRN LVVFNLQNPQ TEFKRIQSPL KYQTRCLAAF
201: PDQQGFLVGS IEGRVGVHHI DDSQQSKNFT FKCHREGNDI FSVNSLNFHP VHHTFATAGS DGAFNFWDKD SKQRLKAFSR CPLPIPCSTF NSDGSIFAYA
301: VCYDWSRGAE NHNPATAKTS IYLHSPQESE VKGKPRIATS RK

Best Arabidopsis Sequence Match ( AT1G80670.1 )
(BLAST)

001: MATFGAPATA NSNPNKSYEV TPSPADSISS LSFSPRADIL VATSWDNQVR CWEISRSGAS LASAPKASIS HDQPVLCSAW KDDGTTVFSG GCDKQAKMWP
101: LLSGGQPVTV AMHEGPIAAM AWIPGMNLLA TGSWDKTLKY WDTRQQNPVH TQQLPDKCYT LSVKHPLMVV GTADRNLIVF NLQNPQTEFK RIQSPLKYQT
201: RCVTAFPDQQ GFLVGSIEGR VGVHHLDDSQ QSKNFTFKCH RDGNDIYSVN SLNFHPVHGT FATAGSDGAF NFWDKDSKQR LKAMSRCNQP IPCSSFNHDG
301: SIYAYAACYD WSKGAENHNP ATAKSSIFLH LPQESEVKAK PRVGATGRK

Arabidopsis Description

RAE1Protein RAE1 [Source:UniProtKB/Swiss-Prot;Acc:Q38942]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.