Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 2
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os01t0635400-01 | Rice | cytosol, plastid | 21.36 | 13.66 |
| Os08t0176800-01 | Rice | plastid | 20.91 | 13.45 |
| Os07t0588700-00 | Rice | cytosol | 13.64 | 13.27 |
| Os07t0588500-00 | Rice | cytosol | 21.82 | 13.19 |
| Os03t0448600-01 | Rice | cytosol | 20.45 | 13.12 |
| Os03t0758700-01 | Rice | endoplasmic reticulum, plasma membrane | 11.36 | 8.5 |
| VIT_00s0490g00010.t01 | Wine grape | cytosol | 0.0 | 0.0 |
Protein Annotations
| MapMan:15.5.15 | Gene3D:3.30.160.60 | EntrezGene:4343764 | ProteinID:BAC83752.1 | ProteinID:BAF22058.1 | ProteinID:BAT02418.1 |
| ProteinID:EAZ40485.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | InterPro:IPR013087 | EnsemblPlantsGene:Os07g0588600 | EnsemblPlants:Os07t0588600-01 | PFAM:PF13912 |
| ScanProsite:PS00028 | PFscan:PS50157 | PANTHER:PTHR26374 | PANTHER:PTHR26374:SF328 | UniProt:Q7EZ27 | SMART:SM00355 |
| SUPFAM:SSF57667 | UniParc:UPI00001BF439 | RefSeq:XP_015647209.1 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | SEG:seg |
Description
Zinc finger, C2H2-type domain containing protein. (Os07t0588600-01)
Coordinates
chr7:+:23973340..23974261
Molecular Weight (calculated)
22141.1 Da
IEP (calculated)
8.138
GRAVY (calculated)
-0.387
Length
220 amino acids
Sequence
(BLAST)
(BLAST)
001: MALDGKPPVP PPSTPPMDSW ACGGRRSKRR GGGGGSSGSS GSSGGGGGGE SEEEYLAACL LMLAHGVRDE AEVVGVAAAT AKPQHGYECS VCGKVYGSYQ
101: ALGGHKTSHR KPPSPAAEPA AGEEPSSGGV AGEAKVHRCS ICLRTFPSGQ ALGGHKRLHY EGGAVGDAVK EKNSLKTKAA VATAVLKDFD LNLPAAATTA
201: GDEAESSPPE AKRARLLLLV
101: ALGGHKTSHR KPPSPAAEPA AGEEPSSGGV AGEAKVHRCS ICLRTFPSGQ ALGGHKRLHY EGGAVGDAVK EKNSLKTKAA VATAVLKDFD LNLPAAATTA
201: GDEAESSPPE AKRARLLLLV
001: MALDTLNSPT STTTTTAPPP FLRCLDETEP ENLESWTKRK RTKRHRIDQP NPPPSEEEYL ALCLLMLARG SSDHHSPPSD HHSLSPLSDH QKDYKCSVCG
101: KSFPSYQALG GHKTSHRKPV SVDVNNSNGT VTNNGNISNG LVGQSGKTHN CSICFKSFPS GQALGGHKRC HYDGGNGNSN GDNSHKFDLN LPADQVSDET
201: IGKSQLSGEE TKSVL
101: KSFPSYQALG GHKTSHRKPV SVDVNNSNGT VTNNGNISNG LVGQSGKTHN CSICFKSFPS GQALGGHKRC HYDGGNGNSN GDNSHKFDLN LPADQVSDET
201: IGKSQLSGEE TKSVL
Arabidopsis Description
At3g49930 [Source:UniProtKB/TrEMBL;Acc:Q9SN24]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.