Factsheet for Os03t0448600-01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
plastid 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0876500-01
Os02t0126300-01
Os02t0247200-01
Os02t0829900-01
Os03t0448600-01
Os04t0486500-01
Os04t0551800-01
Os05t0427300-03
Os05t0552900-01
Os06t0495700-00
Os06t0538000-01
Os06t0687700-01
Os07t0588500-00
Os09t0553100-00
Os10t0539500-01
Os11t0128700-00
Os11t0176200-01
Os12t0125300-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G19590.1	Os10t0539500-01	AT1G07660.1	20706207
AT3G19590.1	Os06t0495700-00	AT1G67210.1	20706207
AT3G19590.1	Os11t0176200-01	AT2G06990.1	20706207
AT3G19590.1	Os02t0829900-01	AT2G22640.1	25262777
AT3G19590.1	Os06t0687700-01	AT3G11830.1	20706207
AT3G19590.1	Os03t0448600-01	AT3G19590.1	25262777
AT3G19590.1	Os07t0588500-00	AT3G19590.1	25262777
AT3G19590.1	Os04t0551800-01	AT3G20050.1	20706207
AT3G19590.1	Os04t0486500-01	AT3G25980.1	25262777
AT3G19590.1	Os09t0553100-00	AT3G53730.1	20706207
AT3G19590.1	Os01t0876500-01	AT4G10110.1	20706207
AT3G19590.1	Os05t0427300-03	AT4G10110.1	20706207
AT3G19590.1	Os11t0128700-00	AT5G05510.1	25262777
AT3G19590.1	Os12t0125300-01	AT5G05510.1	25262777
AT3G19590.1	Os02t0247200-01	AT5G26360.1	20706207
AT3G19590.1	Os06t0538000-01	AT5G26360.1	20706207
AT3G19590.1	Os02t0126300-01	AT5G51600.1	20706207
AT3G19590.1	Os05t0552900-01	AT5G51600.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER87819	Sorghum	cytosol	94.75	94.75
TraesCS4A01G058600.1	Wheat	cytosol, plastid	91.25	90.72
TraesCS4D01G245500.2	Wheat	cytosol, plastid	90.96	90.43
TraesCS4B01G246100.1	Wheat	cytosol	76.38	85.34
Solyc01g107160.2.1	Tomato	nucleus	83.38	84.12
PGSC0003DMT400066160	Potato	extracellular	83.09	83.82
KRH35682	Soybean	nucleus	82.51	83.24
VIT_03s0091g00710.t01	Wine grape	cytosol	81.63	83.09
Bra038220.1-P	Field mustard	cytosol, plastid	82.22	82.94
CDX95434	Canola	cytosol, plastid	82.22	82.94
CDY42193	Canola	cytosol, plastid	82.22	82.94
KRG91092	Soybean	nucleus	81.63	82.35
KRG91104	Soybean	nucleus	82.22	81.98
AT3G19590.1	Thale cress	cytosol	80.47	81.18
CDY59371	Canola	cytosol, plastid	79.88	80.83
AT1G49910.1	Thale cress	cytosol	79.88	80.83
Bra014226.1-P	Field mustard	cytosol, plastid	79.59	80.53
CDY03579	Canola	cytosol, plastid	79.59	80.29
HORVU4Hr1G067810.1	Barley	plastid	91.55	78.5
Os07t0588500-00	Rice	cytosol	69.39	65.38
KRH35672	Soybean	cytosol	24.78	64.89
GSMUA_Achr4P03390_001	Banana	extracellular	43.73	35.46
Os01t0635400-01	Rice	cytosol, plastid	33.82	33.72
Os08t0176800-01	Rice	plastid	32.94	33.04
Os03t0758700-01	Rice	endoplasmic reticulum, plasma membrane	23.91	27.89
Os07t0588600-01	Rice	nucleus	13.12	20.45
Os07t0588700-00	Rice	cytosol	9.62	14.6

Protein Annotations

MapMan:13.3.5.5.2	Gene3D:2.130.10.10	EntrezGene:4333230	ProteinID:AAS01923.1	ProteinID:ABF96947.1	EMBL:AK111867
ProteinID:BAF12385.1	ProteinID:BAS84899.1	ProteinID:EEE59336.1	InterPro:G-protein_beta_WD-40_rep	GO:GO:0000776	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0007049	GO:GO:0007094	GO:GO:0008150	GO:GO:0009524	GO:GO:0009987
GO:GO:0016043	GO:GO:0033597	GO:GO:0043130	GO:GO:1990298	InterPro:IPR001680	InterPro:IPR015943
InterPro:IPR017986	EnsemblPlantsGene:Os03g0448600	EnsemblPlants:Os03t0448600-01	PFAM:PF00400	PRINTS:PR00320	PFscan:PS50082
PFscan:PS50294	PANTHER:PTHR10971	PANTHER:PTHR10971:SF24	UniProt:Q75HB5	SMART:SM00320	SUPFAM:SSF50978
UniParc:UPI0000237F11	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	RefSeq:XP_015633271.1
SEG:seg	:	:	:	:	:

Description

OsWD40-76WD40 repeat-like domain containing protein. (Os03t0448600-01)

Coordinates

chr3:-:19184047..19191279

Molecular Weight (calculated)

37467.9 Da

IEP (calculated)

8.018

GRAVY (calculated)

-0.337

Length

343 amino acids

Sequence
(BLAST)

001: MSAAAAPAAA VGSGKELANP PTDGISNLRF SNHSDHLLVS SWDKTVRLYD ADANVLKGEF VHAGAVLDCC FHDDSSGFSA GADHTVRRLV FGSAKEDLLG
101: RHDAPVRCVE YSYAAGQVIT GSWDKTIKCW DPRGVSGPER TLVGTYAQPE RVYSLSLVGN RLVVATAGRH VNIYDLRNMS QHEQKRDSSL KYQTRCVRCF
201: PNGTGYALSS VEGRVSMEFF DLSESAQSKK YAFKCHRKSE AGRDTVYPVN AIAFHPIYGT FATGGCDGFV NVWDGINKKR LYQYSKYASS IAALSFSKDG
301: HLLAVASSYT YEEGEKSHEP DAIFIRSVNE VEVKPKPKAL AAP

Best Arabidopsis Sequence Match ( AT3G19590.1 )
(BLAST)

001: MTTVTPSAGR ELSNPPSDGI SNLRFSNNSD HLLVSSWDKR VRLYDVSTNS LKGEFLHGGA VLDCCFHDDF SGFSVGADYK VRRIVFNVGK EDILGTHDKA
101: VRCVEYSYAA GQVITGSWDK TVKCWDPRGA SGPERTQVGT YLQPERVYSM SLVGHRLVVA TAGRHVNIYD LRNMSQPEQR RESSLKYQTR CVRCYPNGTG
201: YALSSVEGRV AMEFFDLSEA AQAKKYAFKC HRKSEAGRDI VYPVNSIAFH PIYGTFATGG CDGFVNIWDG NNKKRLYQYS KYPTSISALS FSRDGQLLAV
301: ASSYTFEEGE KSQEPEAIFV RSVNEIEVKP KPKVYPNPAA

Arabidopsis Description

BUB3.1BUB3.1 [Source:UniProtKB/TrEMBL;Acc:A0A178VA46]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.