Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- plastid 3
- nucleus 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU7Hr1G045920.2 | Barley | extracellular, nucleus | 58.0 | 56.86 |
| Solyc10g081990.1.1 | Tomato | cytosol | 52.0 | 50.98 |
| GSMUA_Achr5P01350_001 | Banana | cytosol | 74.0 | 45.96 |
| Zm00001d042642_P002 | Maize | nucleus | 74.0 | 43.79 |
| CDX86873 | Canola | nucleus | 68.0 | 41.72 |
| Os05t0427300-03 | Rice | nucleus | 78.0 | 41.71 |
| Bra037907.1-P | Field mustard | nucleus | 68.0 | 41.46 |
| Solyc11g039950.1.1 | Tomato | nucleus | 72.0 | 40.68 |
| CDX99527 | Canola | nucleus | 68.0 | 40.24 |
| AT4G10110.1 | Thale cress | nucleus | 68.0 | 39.31 |
| TraesCS3A01G389800.1 | Wheat | cytosol | 78.0 | 38.05 |
| TraesCS3B01G419000.1 | Wheat | nucleus | 78.0 | 38.05 |
| TraesCS3D01G379900.1 | Wheat | cytosol, nucleus, plastid | 78.0 | 38.05 |
| VIT_02s0109g00370.t01 | Wine grape | nucleus | 68.0 | 37.16 |
| KRH34951 | Soybean | nucleus | 69.0 | 37.1 |
| PGSC0003DMT400069054 | Potato | nucleus | 73.0 | 35.61 |
| KRG91836 | Soybean | nucleus | 69.0 | 35.2 |
| VIT_18s0089g00220.t01 | Wine grape | nucleus | 67.0 | 34.54 |
| HORVU1Hr1G055970.27 | Barley | mitochondrion | 60.0 | 28.99 |
| Zm00001d012239_P003 | Maize | nucleus | 76.0 | 16.31 |
| OQU87973 | Sorghum | nucleus | 75.0 | 15.86 |
Protein Annotations
| MapMan:16.8.1.2.3.2 | Gene3D:3.30.70.330 | ProteinID:BAF06884.2 | ProteinID:BAS75509.1 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005794 | GO:GO:0005975 | GO:GO:0006464 | GO:GO:0006486 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0008378 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 |
| GO:GO:0016740 | GO:GO:0016757 | GO:GO:0019538 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf |
| EnsemblPlantsGene:Os01g0876500 | EnsemblPlants:Os01t0876500-01 | PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR45284 | UniProt:Q0JH94 |
| InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0001B669D2 | : |
Description
Nucleotide-binding, alpha-beta plait domain containing protein. (Os01t0876500-01);Conserved hypothetical protein. (Os01t0876500-02)
Coordinates
chr1:+:38031463..38033471
Molecular Weight (calculated)
11385.6 Da
IEP (calculated)
8.175
GRAVY (calculated)
-0.435
Length
100 amino acids
Sequence
(BLAST)
(BLAST)
1: MARNPTRTVY IGNLDEKVTE RILYEILIQP GRVVDLCIPR DKETSCPKGY AFAEYETEEI AQYAVQLFSG LVRLYGKTLK FAISGQDKPS SNGNNPRIQW
001: MSGTSNCTVY IGNVDERVSD RVLYDIMIQA GRVIDLHIPR DKETDKPKGF AFAEYETEEI ADYAVKLFSG LVSLYNRTLK FAISGQDKLQ SNSANSGHRA
101: RPQSLAFEHS DRAAYHHLER FSSQLISPPS PLPLDYTQEP PPPGVSNGAS LEYSRRVLGS ALDSINHSRP RRY
101: RPQSLAFEHS DRAAYHHLER FSSQLISPPS PLPLDYTQEP PPPGVSNGAS LEYSRRVLGS ALDSINHSRP RRY
Arabidopsis Description
At4g10100 [Source:UniProtKB/TrEMBL;Acc:Q8GW25]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.