CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os01t0876500-01	Rice	cytosol, nucleus, plastid	15.86	75.0
Zm00001d012239_P003	Maize	nucleus	58.99	59.87
HORVU7Hr1G045920.2	Barley	extracellular, nucleus	11.84	54.9
TraesCS3A01G389800.1	Wheat	cytosol	21.56	49.76
TraesCS3D01G379900.1	Wheat	cytosol, nucleus, plastid	21.35	49.27
GSMUA_Achr5P01350_001	Banana	cytosol	16.7	49.07
Solyc10g081990.1.1	Tomato	cytosol	10.57	49.02
KXG22055	Sorghum	nucleus	19.66	48.95
TraesCS3B01G419000.1	Wheat	nucleus	20.93	48.29
AT4G10110.1	Thale cress	nucleus	15.43	42.2
Bra037907.1-P	Field mustard	nucleus	14.38	41.46
CDX86873	Canola	nucleus	14.16	41.1
CDX99527	Canola	nucleus	14.59	40.83
Solyc11g039950.1.1	Tomato	nucleus	15.01	40.11
KRH34951	Soybean	nucleus	15.64	39.78
KRG91836	Soybean	nucleus	16.07	38.78
VIT_02s0109g00370.t01	Wine grape	nucleus	14.59	37.7
PGSC0003DMT400069054	Potato	nucleus	16.07	37.07
VIT_18s0089g00220.t01	Wine grape	nucleus	14.38	35.05
HORVU1Hr1G055970.27	Barley	mitochondrion	13.95	31.88

Protein Annotations

MapMan:16.8.1.2.3.2	Gene3D:3.30.70.330	UniProt:A0A1W0W0T9	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	InterPro:IPR000504	InterPro:IPR012677
InterPro:Nucleotide-bd_a/b_plait_sf	EnsemblPlants:OQU87973	ProteinID:OQU87973	ProteinID:OQU87973.1	PFAM:PF00076	PFscan:PS50102
InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	EnsemblPlantsGene:SORBI_3003G374850	SUPFAM:SSF54928	TMHMM:TMhelix
UniParc:UPI0009DC8F68	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:+:68973411..68977795

Molecular Weight (calculated)

52381.1 Da

IEP (calculated)

7.957

GRAVY (calculated)

-0.329

Length

473 amino acids

Sequence
(BLAST)

001: MARNPGCTVF IGNLDEKLSE RVLYEILIQA GHVVDLHVPS DKESNSRKGY AFAEYETEEI AQYAVRLFSG LVRINGKTLK FVIAGHDKPS SNDNNSVMLN
101: PVPSSNGNNP VMPKLNPIPL PKQTQILHCC DMPVSRTPAY PVLYQVDQYT AMASSILVRG KKRWLLRAYH FFKDVYRTEE LVSNSPDPKL FYSGMRTAYS
201: RIKLLSSFCA PWRLLQGQNH TSSHESEWYS YQGPHTRRVP MEVEGDGTAG AGDGGVDDVF FCVAATTRGN RNNISYFHTN AVGEDAESAL TLAALCLDHA
301: PEHHRWHHHT VDGARTFAFL SADDGRTYFA AADPTPGAAE VVRFLERVRD ACDAAPRKRL REEAVAPVAR QFARTLRGVA GPSSGVADAE LPEASLQAQE
401: PSTPLQALAS EKGEERQRAG ERRRALQPGE SALPGWRSWS RHATVVIVVD VVLCLVLFAV WMGVCKGFRC LTR

Best Arabidopsis Sequence Match ( AT4G10110.1 )
(BLAST)

001: MSGTSNCTVY IGNVDERVSD RVLYDIMIQA GRVIDLHIPR DKETDKPKGF AFAEYETEEI ADYAVKLFSG LVSLYNRTLK FAISGQDKLQ SNSANSGHRA
101: RPQSLAFEHS DRAAYHHLER FSSQLISPPS PLPLDYTQEP PPPGVSNGAS LEYSRRVLGS ALDSINHSRP RRY

Arabidopsis Description

At4g10100 [Source:UniProtKB/TrEMBL;Acc:Q8GW25]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.