CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG91836	Soybean	nucleus	96.24	91.33
Os01t0876500-01	Rice	cytosol, nucleus, plastid	37.1	69.0
VIT_18s0089g00220.t01	Wine grape	nucleus	69.89	67.01
CDX86873	Canola	nucleus	53.76	61.35
VIT_02s0109g00370.t01	Wine grape	nucleus	60.22	61.2
Bra037907.1-P	Field mustard	nucleus	53.23	60.37
AT4G10110.1	Thale cress	nucleus	55.91	60.12
PGSC0003DMT400069054	Potato	nucleus	65.05	59.02
CDX99527	Canola	nucleus	53.23	58.58
Solyc11g039950.1.1	Tomato	nucleus	52.15	54.8
HORVU7Hr1G045920.2	Barley	extracellular, nucleus	29.57	53.92
GSMUA_Achr5P01350_001	Banana	cytosol	45.16	52.17
Os05t0427300-03	Rice	nucleus	50.54	50.27
HORVU1Hr1G065440.3	Barley	nucleus	50.0	49.21
TraesCS1A01G267300.1	Wheat	nucleus	48.92	48.66
TraesCS1D01G267400.2	Wheat	nucleus	48.39	47.62
TraesCS1B01G278200.2	Wheat	nucleus	48.39	47.62
KXG22055	Sorghum	nucleus	47.85	46.84
Zm00001d010213_P001	Maize	extracellular, nucleus	45.7	44.5
HORVU1Hr1G065390.1	Barley	mitochondrion	50.0	41.33
Zm00001d038248_P002	Maize	cytosol	40.32	40.98
Zm00001d042642_P002	Maize	nucleus	34.95	38.46
TraesCS3A01G389800.1	Wheat	cytosol	40.32	36.59
TraesCS3B01G419000.1	Wheat	nucleus	40.32	36.59
TraesCS3D01G379900.1	Wheat	cytosol, nucleus, plastid	39.25	35.61
HORVU1Hr1G055970.27	Barley	mitochondrion	32.26	28.99
OQU87973	Sorghum	nucleus	39.78	15.64
Zm00001d012239_P003	Maize	nucleus	38.17	15.24

Protein Annotations

EntrezGene:100784532	MapMan:16.8.1.2.3.2	Gene3D:3.30.70.330	EMBL:ACUP02006645	EnsemblPlantsGene:GLYMA_10G214800	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	UniProt:I1LD53	InterPro:IPR000504	InterPro:IPR012677
EnsemblPlants:KRH34951	ProteinID:KRH34951	ProteinID:KRH34951.1	ProteinID:KRH34952.1	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076
PFscan:PS50102	PANTHER:PTHR45284	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928
UniParc:UPI000233C1F8	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr10:-:44695259..44697549

Molecular Weight (calculated)

20896.0 Da

IEP (calculated)

8.862

GRAVY (calculated)

-0.727

Length

186 amino acids

Sequence
(BLAST)

001: MSGNSNCSVY IGNLDERVTD RVLYDILIQA GRVVDLHIPK DKESEKPKGF AFAEYETEEI ADYAVRLFSG LITLYNRTLK FAISGRDKTT SNGSTAITPT
101: SNSSQRPRPY PVSINNSENF QHSARLSTPD RFSDHPVNYS QVLPSRVTDQ SSGYGSHYSG NNYEYSRRAF GATLDSISRS RSRRFD

Best Arabidopsis Sequence Match ( AT4G10110.1 )
(BLAST)

001: MSGTSNCTVY IGNVDERVSD RVLYDIMIQA GRVIDLHIPR DKETDKPKGF AFAEYETEEI ADYAVKLFSG LVSLYNRTLK FAISGQDKLQ SNSANSGHRA
101: RPQSLAFEHS DRAAYHHLER FSSQLISPPS PLPLDYTQEP PPPGVSNGAS LEYSRRVLGS ALDSINHSRP RRY

Arabidopsis Description

At4g10100 [Source:UniProtKB/TrEMBL;Acc:Q8GW25]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.