Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d010213_P001 | Maize | extracellular, nucleus | 74.32 | 71.2 |
| KXG22055 | Sorghum | nucleus | 72.68 | 70.0 |
| Os05t0427300-03 | Rice | nucleus | 63.39 | 62.03 |
| HORVU1Hr1G065440.3 | Barley | nucleus | 63.39 | 61.38 |
| TraesCS1D01G267400.2 | Wheat | nucleus | 62.84 | 60.85 |
| TraesCS1A01G267300.1 | Wheat | nucleus | 61.2 | 59.89 |
| TraesCS1B01G278200.2 | Wheat | nucleus | 61.75 | 59.79 |
| Zm00001d042642_P002 | Maize | nucleus | 51.91 | 56.21 |
| GSMUA_Achr5P01350_001 | Banana | cytosol | 47.54 | 54.04 |
| HORVU1Hr1G065390.1 | Barley | mitochondrion | 63.39 | 51.56 |
| Solyc10g081990.1.1 | Tomato | cytosol | 27.87 | 50.0 |
| Bra037907.1-P | Field mustard | nucleus | 42.62 | 47.56 |
| CDX86873 | Canola | nucleus | 42.08 | 47.24 |
| AT4G10110.1 | Thale cress | nucleus | 42.62 | 45.09 |
| CDX99527 | Canola | nucleus | 41.53 | 44.97 |
| Solyc11g039950.1.1 | Tomato | nucleus | 43.17 | 44.63 |
| VIT_02s0109g00370.t01 | Wine grape | nucleus | 43.17 | 43.17 |
| PGSC0003DMT400069054 | Potato | nucleus | 45.9 | 40.98 |
| VIT_18s0089g00220.t01 | Wine grape | nucleus | 43.17 | 40.72 |
| KRH34951 | Soybean | nucleus | 40.98 | 40.32 |
| KRG91836 | Soybean | nucleus | 41.53 | 38.78 |
| Zm00001d012239_P003 | Maize | nucleus | 49.73 | 19.53 |
Protein Annotations
| EnsemblPlants:Zm00001d038248_P002 | EnsemblPlants:Zm00001d038248_T002 | EnsemblPlantsGene:Zm00001d038248 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf |
| InterPro:RRM_dom | PANTHER:PTHR45284 | PFAM:PF00076 | PFscan:PS50102 | ProteinID:AQK86128.1 | SMART:SM00360 |
| SUPFAM:SSF54928 | UniParc:UPI000842CF74 | UniProt:A0A1D6M4R7 | MapMan:16.8.1.2.3.2 | : | : |
Description
RNA-binding (RRM/RBD/RNP motifs) family protein
Coordinates
chr6:-:152313147..152316646
Molecular Weight (calculated)
20464.2 Da
IEP (calculated)
7.692
GRAVY (calculated)
-0.625
Length
183 amino acids
Sequence
(BLAST)
(BLAST)
001: MARNPGCTVF IGNLDDKVPE RVLYEILIQV GRVVDLHIPR DKETSRPKGY AFAEYETEEI AQYAVKLFSG LVRLHNKTLR FAISGQDKPS LNGNIPVTPR
101: LNSVPQPKPH QPMRSSDTPL PQHAAVNGRN AGYGIPPNHS YDTHTQGEEN SGHFGIQVNV ELCVKSHNSP FDQHCRVGYR IED
101: LNSVPQPKPH QPMRSSDTPL PQHAAVNGRN AGYGIPPNHS YDTHTQGEEN SGHFGIQVNV ELCVKSHNSP FDQHCRVGYR IED
001: MSGTSNCTVY IGNVDERVSD RVLYDIMIQA GRVIDLHIPR DKETDKPKGF AFAEYETEEI ADYAVKLFSG LVSLYNRTLK FAISGQDKLQ SNSANSGHRA
101: RPQSLAFEHS DRAAYHHLER FSSQLISPPS PLPLDYTQEP PPPGVSNGAS LEYSRRVLGS ALDSINHSRP RRY
101: RPQSLAFEHS DRAAYHHLER FSSQLISPPS PLPLDYTQEP PPPGVSNGAS LEYSRRVLGS ALDSINHSRP RRY
Arabidopsis Description
At4g10100 [Source:UniProtKB/TrEMBL;Acc:Q8GW25]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.