Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os01t0876500-01 | Rice | cytosol, nucleus, plastid | 43.79 | 74.0 |
| HORVU7Hr1G045920.2 | Barley | extracellular, nucleus | 32.54 | 53.92 |
| TraesCS3A01G389800.1 | Wheat | cytosol | 63.31 | 52.2 |
| Zm00001d038248_P002 | Maize | cytosol | 56.21 | 51.91 |
| TraesCS3D01G379900.1 | Wheat | cytosol, nucleus, plastid | 62.72 | 51.71 |
| TraesCS3B01G419000.1 | Wheat | nucleus | 61.54 | 50.73 |
| Zm00001d010213_P001 | Maize | extracellular, nucleus | 55.03 | 48.69 |
| Solyc10g081990.1.1 | Tomato | cytosol | 27.81 | 46.08 |
| GSMUA_Achr5P01350_001 | Banana | cytosol | 43.79 | 45.96 |
| Bra037907.1-P | Field mustard | nucleus | 36.09 | 37.2 |
| Solyc11g039950.1.1 | Tomato | nucleus | 38.46 | 36.72 |
| CDX86873 | Canola | nucleus | 34.91 | 36.2 |
| AT4G10110.1 | Thale cress | nucleus | 36.69 | 35.84 |
| CDX99527 | Canola | nucleus | 35.5 | 35.5 |
| KRH34951 | Soybean | nucleus | 38.46 | 34.95 |
| VIT_02s0109g00370.t01 | Wine grape | nucleus | 37.28 | 34.43 |
| KRG91836 | Soybean | nucleus | 39.65 | 34.18 |
| VIT_18s0089g00220.t01 | Wine grape | nucleus | 39.05 | 34.02 |
| PGSC0003DMT400069054 | Potato | nucleus | 40.24 | 33.17 |
| HORVU1Hr1G055970.27 | Barley | mitochondrion | 37.28 | 30.43 |
| Zm00001d012239_P003 | Maize | nucleus | 69.82 | 25.32 |
Protein Annotations
| EnsemblPlants:Zm00001d042642_P002 | EnsemblPlants:Zm00001d042642_T002 | EnsemblPlantsGene:Zm00001d042642 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf |
| InterPro:RRM_dom | PANTHER:PTHR45284 | PFAM:PF00076 | PFscan:PS50102 | ProteinID:ONM35960.1 | SMART:SM00360 |
| SUPFAM:SSF54928 | UniParc:UPI000843C9F1 | UniProt:A0A1D6N5R1 | MapMan:16.8.1.2.3.2 | : | : |
Description
RNA-binding (RRM/RBD/RNP motifs) family protein
Coordinates
chr3:-:175092452..175095996
Molecular Weight (calculated)
18496.2 Da
IEP (calculated)
9.587
GRAVY (calculated)
-0.329
Length
169 amino acids
Sequence
(BLAST)
(BLAST)
001: MARNPGRTVF IGNLDEKVSE RVLYEILIQA GHVVGLHVPS NKESNSRKGY AFAEYETEDI AQYAVRLFSG LVRINGKTLK FVIAGHDKPS SNDNKSVLLN
101: HVPSSNGNNP VMPKLNPIPL PKPTQIMRCS DMPVSHIPAY PVVNGRIGGY GFSSTPYPNG FHPQGEILS
101: HVPSSNGNNP VMPKLNPIPL PKPTQIMRCS DMPVSHIPAY PVVNGRIGGY GFSSTPYPNG FHPQGEILS
001: MSGTSNCTVY IGNVDERVSD RVLYDIMIQA GRVIDLHIPR DKETDKPKGF AFAEYETEEI ADYAVKLFSG LVSLYNRTLK FAISGQDKLQ SNSANSGHRA
101: RPQSLAFEHS DRAAYHHLER FSSQLISPPS PLPLDYTQEP PPPGVSNGAS LEYSRRVLGS ALDSINHSRP RRY
101: RPQSLAFEHS DRAAYHHLER FSSQLISPPS PLPLDYTQEP PPPGVSNGAS LEYSRRVLGS ALDSINHSRP RRY
Arabidopsis Description
At4g10100 [Source:UniProtKB/TrEMBL;Acc:Q8GW25]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.