Factsheet for Solyc11g039950.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
cytosol 2
plastid 1
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os01t0876500-01	Rice	cytosol, nucleus, plastid	40.68	72.0
PGSC0003DMT400069054	Potato	nucleus	76.27	65.85
Solyc10g081990.1.1	Tomato	cytosol	36.72	63.73
HORVU7Hr1G045920.2	Barley	extracellular, nucleus	31.64	54.9
KRH34951	Soybean	nucleus	54.8	52.15
VIT_18s0089g00220.t01	Wine grape	nucleus	55.37	50.52
VIT_02s0109g00370.t01	Wine grape	nucleus	51.98	50.27
KRG91836	Soybean	nucleus	53.67	48.47
GSMUA_Achr5P01350_001	Banana	cytosol	42.37	46.58
Os05t0427300-03	Rice	nucleus	48.02	45.45
KXG22055	Sorghum	nucleus	48.59	45.26
Zm00001d010213_P001	Maize	extracellular, nucleus	48.59	45.03
HORVU1Hr1G065440.3	Barley	nucleus	47.46	44.44
TraesCS1A01G267300.1	Wheat	nucleus	46.89	44.38
TraesCS1B01G278200.2	Wheat	nucleus	46.89	43.92
TraesCS1D01G267400.2	Wheat	nucleus	46.89	43.92
Zm00001d038248_P002	Maize	cytosol	44.63	43.17
Zm00001d042642_P002	Maize	nucleus	36.72	38.46
TraesCS3B01G419000.1	Wheat	nucleus	43.5	37.56
HORVU1Hr1G065390.1	Barley	mitochondrion	47.46	37.33
TraesCS3A01G389800.1	Wheat	cytosol	42.37	36.59
TraesCS3D01G379900.1	Wheat	cytosol, nucleus, plastid	41.81	36.1
HORVU1Hr1G055970.27	Barley	mitochondrion	30.51	26.09
Zm00001d012239_P003	Maize	nucleus	40.11	15.24
OQU87973	Sorghum	nucleus	40.11	15.01

Protein Annotations

EnsemblPlants:Solyc11g039950.1.1	EnsemblPlantsGene:Solyc11g039950.1	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf	InterPro:RRM_dom
PANTHER:PTHR45284	PFAM:PF00076	PFscan:PS50102	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI0002769E10
UniProt:K4D7X1	MapMan:16.8.1.2.3.2	:	:	:	:

Description

No Description!

Coordinates

chr11:-:40563335..40571304

Molecular Weight (calculated)

20217.1 Da

IEP (calculated)

8.733

GRAVY (calculated)

-0.436

Length

177 amino acids

Sequence
(BLAST)

001: MAENPNCTVY VGNLDERVCD RVLYDILIQA GRVVDLYIPR DKETDKPKGF AFAKYETEEI ADYAVKLFSG LVTLYNRTLK FAISGQDKPY NNSPIATLPA
101: LNIPSRPRPD KEISPNSARL STSCLFSQHQ TSYAQASHHH YKHSHKDMKL WMTYSAYKAS KQVLILREFI VDVGEIR

Best Arabidopsis Sequence Match ( AT4G10110.1 )
(BLAST)

001: MSGTSNCTVY IGNVDERVSD RVLYDIMIQA GRVIDLHIPR DKETDKPKGF AFAEYETEEI ADYAVKLFSG LVSLYNRTLK FAISGQDKLQ SNSANSGHRA
101: RPQSLAFEHS DRAAYHHLER FSSQLISPPS PLPLDYTQEP PPPGVSNGAS LEYSRRVLGS ALDSINHSRP RRY

Arabidopsis Description

At4g10100 [Source:UniProtKB/TrEMBL;Acc:Q8GW25]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.