Factsheet for Zm00001d012239_P003

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os01t0876500-01	Rice	cytosol, nucleus, plastid	16.31	76.0
Zm00001d042642_P002	Maize	nucleus	25.32	69.82
OQU87973	Sorghum	nucleus	59.87	58.99
HORVU7Hr1G045920.2	Barley	extracellular, nucleus	11.16	50.98
Solyc10g081990.1.1	Tomato	cytosol	10.94	50.0
Zm00001d038248_P002	Maize	cytosol	19.53	49.73
GSMUA_Achr5P01350_001	Banana	cytosol	16.95	49.07
Zm00001d010213_P001	Maize	extracellular, nucleus	19.31	47.12
TraesCS3D01G379900.1	Wheat	cytosol, nucleus, plastid	20.39	46.34
TraesCS3A01G389800.1	Wheat	cytosol	20.39	46.34
TraesCS3B01G419000.1	Wheat	nucleus	20.17	45.85
AT4G10110.1	Thale cress	nucleus	15.45	41.62
Bra037907.1-P	Field mustard	nucleus	14.16	40.24
Solyc11g039950.1.1	Tomato	nucleus	15.24	40.11
CDX86873	Canola	nucleus	13.73	39.26
CDX99527	Canola	nucleus	14.16	39.05
KRH34951	Soybean	nucleus	15.24	38.17
VIT_02s0109g00370.t01	Wine grape	nucleus	14.81	37.7
KRG91836	Soybean	nucleus	15.45	36.73
VIT_18s0089g00220.t01	Wine grape	nucleus	15.24	36.6
PGSC0003DMT400069054	Potato	nucleus	15.67	35.61
HORVU1Hr1G055970.27	Barley	mitochondrion	12.88	28.99

Protein Annotations

EntrezGene:103636432	MapMan:16.8.1.2.3.2	Gene3D:3.30.70.330	UniProt:A0A1D6G7P9	ProteinID:AQK99177.1	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	InterPro:RBD_domain_sf
InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	TMHMM:TMhelix	UniParc:UPI000842A8F0	EnsemblPlantsGene:Zm00001d012239
EnsemblPlants:Zm00001d012239_P003	EnsemblPlants:Zm00001d012239_T003	SEG:seg	:	:	:

Description

RNA-binding (RRM/RBD/RNP motifs) family protein

Coordinates

chr8:-:170751693..170756148

Molecular Weight (calculated)

50450.8 Da

IEP (calculated)

7.199

GRAVY (calculated)

-0.194

Length

466 amino acids

Sequence
(BLAST)

001: MARDPARTVF IGNLDEKVSE RILYEILIQA GHVVDLHVPS DKESNSLKGY AFVEYETEEI AQYAVKLFSG LVRISGKTLK FMIAGYDKPS SNVNTSVMLN
101: PVPSSNGNNP VTPKLNPIPL PKQTQIMCCS DMPVSRTLAY QVVNGRIGGY VFSLTPYPYG FQALSGGQVH GHGQVSNRTY DYNRQEFGSV LSIVHGATHA
201: RTRAPARLSV HDLAPIRAKN SPPSCVPMEV EADGIQEATA GAGDGGGVDD VFFCVAATSR GNKNSISYFH TNAVGEDAES ALALAALCLD HAPDHHRWHH
301: HTVAGAKTFA FLSADDGRTY FAAADPSPGA AEVVRFLERV RDACDAAPRK RLRDEAVAPV ARQFARTLRA AAAGPSSGAE LPEASLQAKE PSTPLAPVCE
401: KDEEERQRAG ERRRAFLQPE ESASALPGWR PWWRHASVVI VVDVVLCLVL FAVWMGVCKG FGCLTR

Best Arabidopsis Sequence Match ( AT4G10110.1 )
(BLAST)

001: MSGTSNCTVY IGNVDERVSD RVLYDIMIQA GRVIDLHIPR DKETDKPKGF AFAEYETEEI ADYAVKLFSG LVSLYNRTLK FAISGQDKLQ SNSANSGHRA
101: RPQSLAFEHS DRAAYHHLER FSSQLISPPS PLPLDYTQEP PPPGVSNGAS LEYSRRVLGS ALDSINHSRP RRY

Arabidopsis Description

At4g10100 [Source:UniProtKB/TrEMBL;Acc:Q8GW25]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.