Factsheet for GSMUA_Achr5P01350_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os01t0876500-01	Rice	cytosol, nucleus, plastid	45.96	74.0
HORVU7Hr1G045920.2	Barley	extracellular, nucleus	36.65	57.84
Solyc10g081990.1.1	Tomato	cytosol	36.02	56.86
Os05t0427300-03	Rice	nucleus	65.84	56.68
TraesCS1B01G278200.2	Wheat	nucleus	65.22	55.56
TraesCS1A01G267300.1	Wheat	nucleus	63.98	55.08
TraesCS1D01G267400.2	Wheat	nucleus	64.6	55.03
HORVU1Hr1G065440.3	Barley	nucleus	64.6	55.03
KXG22055	Sorghum	nucleus	62.73	53.16
Zm00001d010213_P001	Maize	extracellular, nucleus	62.73	52.88
VIT_02s0109g00370.t01	Wine grape	nucleus	56.52	49.73
Bra037907.1-P	Field mustard	nucleus	49.69	48.78
VIT_18s0089g00220.t01	Wine grape	nucleus	57.76	47.94
Zm00001d038248_P002	Maize	cytosol	54.04	47.54
CDX86873	Canola	nucleus	47.83	47.24
AT4G10110.1	Thale cress	nucleus	49.69	46.24
HORVU1Hr1G065390.1	Barley	mitochondrion	64.6	46.22
CDX99527	Canola	nucleus	47.83	45.56
KRH34951	Soybean	nucleus	52.17	45.16
KRG91836	Soybean	nucleus	54.04	44.39
TraesCS3B01G419000.1	Wheat	nucleus	55.9	43.9
Zm00001d042642_P002	Maize	nucleus	45.96	43.79
TraesCS3D01G379900.1	Wheat	cytosol, nucleus, plastid	54.66	42.93
TraesCS3A01G389800.1	Wheat	cytosol	54.66	42.93
PGSC0003DMT400069054	Potato	nucleus	54.66	42.93
Solyc11g039950.1.1	Tomato	nucleus	46.58	42.37
HORVU1Hr1G055970.27	Barley	mitochondrion	39.13	30.43
Zm00001d012239_P003	Maize	nucleus	49.07	16.95
OQU87973	Sorghum	nucleus	49.07	16.7

Protein Annotations

EnsemblPlants:GSMUA_Achr5P01350_001	EnsemblPlants:GSMUA_Achr5T01350_001	EnsemblPlantsGene:GSMUA_Achr5G01350_001	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf
InterPro:RRM_dom	InterPro:SF3B4_RRM1	PANTHER:PTHR45284	PFAM:PF00076	PFscan:PS50102	SMART:SM00360
SUPFAM:SSF54928	UniParc:UPI0002961A90	UniProt:M0SUR4	MapMan:16.8.1.2.3.2	:	:

Description

Putative Splicing factor 3B subunit 4 [Source:GMGC_GENE;Acc:GSMUA_Achr5G01350_001]

Coordinates

chr5:-:783471..787629

Molecular Weight (calculated)

18263.7 Da

IEP (calculated)

9.918

GRAVY (calculated)

-0.566

Length

161 amino acids

Sequence
(BLAST)

001: MSRDPAKTVY IGNLDEKVSE RVLYEILIQV GRVVDLYIPR DKETNRHKGY AFAEYESEEI ADYAVRLFSG LVRLHNKTLK FAISGQDKSS QNTRTPMTPK
101: PNSPPILKPT SVHTREIATS NGLVSQGIGS RNYEYTRRVF GAMLNNVNRW GGTHPIVYPS Y

Best Arabidopsis Sequence Match ( AT4G10110.1 )
(BLAST)

001: MSGTSNCTVY IGNVDERVSD RVLYDIMIQA GRVIDLHIPR DKETDKPKGF AFAEYETEEI ADYAVKLFSG LVSLYNRTLK FAISGQDKLQ SNSANSGHRA
101: RPQSLAFEHS DRAAYHHLER FSSQLISPPS PLPLDYTQEP PPPGVSNGAS LEYSRRVLGS ALDSINHSRP RRY

Arabidopsis Description

At4g10100 [Source:UniProtKB/TrEMBL;Acc:Q8GW25]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.