Subcellular Localization
min:
: max
Winner_takes_all: extracellular, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
extracellular:
20408568
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG22055 | Sorghum | nucleus | 90.58 | 91.05 |
| Os05t0427300-03 | Rice | nucleus | 78.53 | 80.21 |
| HORVU1Hr1G065440.3 | Barley | nucleus | 76.44 | 77.25 |
| TraesCS1A01G267300.1 | Wheat | nucleus | 74.35 | 75.94 |
| TraesCS1D01G267400.2 | Wheat | nucleus | 74.87 | 75.66 |
| TraesCS1B01G278200.2 | Wheat | nucleus | 74.35 | 75.13 |
| Zm00001d038248_P002 | Maize | cytosol | 71.2 | 74.32 |
| HORVU1Hr1G065390.1 | Barley | mitochondrion | 76.44 | 64.89 |
| GSMUA_Achr5P01350_001 | Banana | cytosol | 52.88 | 62.73 |
| Zm00001d042642_P002 | Maize | nucleus | 48.69 | 55.03 |
| VIT_02s0109g00370.t01 | Wine grape | nucleus | 49.74 | 51.91 |
| Solyc10g081990.1.1 | Tomato | cytosol | 27.23 | 50.98 |
| VIT_18s0089g00220.t01 | Wine grape | nucleus | 50.26 | 49.48 |
| Bra037907.1-P | Field mustard | nucleus | 41.88 | 48.78 |
| Solyc11g039950.1.1 | Tomato | nucleus | 45.03 | 48.59 |
| CDX86873 | Canola | nucleus | 40.84 | 47.85 |
| AT4G10110.1 | Thale cress | nucleus | 42.93 | 47.4 |
| CDX99527 | Canola | nucleus | 41.36 | 46.75 |
| KRG91836 | Soybean | nucleus | 47.64 | 46.43 |
| PGSC0003DMT400069054 | Potato | nucleus | 49.21 | 45.85 |
| KRH34951 | Soybean | nucleus | 44.5 | 45.7 |
| Zm00001d012239_P003 | Maize | nucleus | 47.12 | 19.31 |
Protein Annotations
| EntrezGene:100384862 | MapMan:16.8.1.2.3.2 | Gene3D:3.30.70.330 | ProteinID:AQK93641.1 | EMBL:BT084398 | UniProt:C4J0Q1 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 |
| InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR45284 | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0001A4BB75 | EnsemblPlantsGene:Zm00001d010213 | EnsemblPlants:Zm00001d010213_P001 | EnsemblPlants:Zm00001d010213_T001 |
Description
RNA recognition motif-containing protein
Coordinates
chr8:+:104356766..104359468
Molecular Weight (calculated)
21174.1 Da
IEP (calculated)
9.716
GRAVY (calculated)
-0.568
Length
191 amino acids
Sequence
(BLAST)
(BLAST)
001: MARNPGCTVF IGNLDDKVPE RVLYEILIQV GRVVDLHIPR DKETSRPKGY AFAEYETEEI AQYAIKLFSG LVRLRNKTLR FAISGQDKPS LNGNIPVIPS
101: LNSVPQPKPP HQHMRSSDTP LPQHTAVSGR SAGYGISQNH SYDTHTQAPS SGLPSRGLSN GTYEYSRRVF GSVLNDVSRR ATREPIPYPS C
101: LNSVPQPKPP HQHMRSSDTP LPQHTAVSGR SAGYGISQNH SYDTHTQAPS SGLPSRGLSN GTYEYSRRVF GSVLNDVSRR ATREPIPYPS C
001: MSGTSNCTVY IGNVDERVSD RVLYDIMIQA GRVIDLHIPR DKETDKPKGF AFAEYETEEI ADYAVKLFSG LVSLYNRTLK FAISGQDKLQ SNSANSGHRA
101: RPQSLAFEHS DRAAYHHLER FSSQLISPPS PLPLDYTQEP PPPGVSNGAS LEYSRRVLGS ALDSINHSRP RRY
101: RPQSLAFEHS DRAAYHHLER FSSQLISPPS PLPLDYTQEP PPPGVSNGAS LEYSRRVLGS ALDSINHSRP RRY
Arabidopsis Description
At4g10100 [Source:UniProtKB/TrEMBL;Acc:Q8GW25]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.