Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- mitochondrion 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU1Hr1G065440.3 | Barley | nucleus | 84.0 | 100.0 |
| TraesCS1D01G267400.2 | Wheat | nucleus | 80.44 | 95.77 |
| TraesCS1B01G278200.2 | Wheat | nucleus | 79.56 | 94.71 |
| TraesCS1A01G267300.1 | Wheat | nucleus | 77.78 | 93.58 |
| Os05t0427300-03 | Rice | nucleus | 66.22 | 79.68 |
| KXG22055 | Sorghum | nucleus | 64.89 | 76.84 |
| Zm00001d010213_P001 | Maize | extracellular, nucleus | 64.89 | 76.44 |
| GSMUA_Achr5P01350_001 | Banana | cytosol | 46.22 | 64.6 |
| Zm00001d038248_P002 | Maize | cytosol | 51.56 | 63.39 |
| HORVU7Hr1G045920.2 | Barley | extracellular, nucleus | 27.11 | 59.8 |
| VIT_02s0109g00370.t01 | Wine grape | nucleus | 43.11 | 53.01 |
| Solyc10g081990.1.1 | Tomato | cytosol | 23.56 | 51.96 |
| VIT_18s0089g00220.t01 | Wine grape | nucleus | 44.44 | 51.55 |
| Bra037907.1-P | Field mustard | nucleus | 37.33 | 51.22 |
| AT4G10110.1 | Thale cress | nucleus | 38.67 | 50.29 |
| KRG91836 | Soybean | nucleus | 43.56 | 50.0 |
| KRH34951 | Soybean | nucleus | 41.33 | 50.0 |
| CDX99527 | Canola | nucleus | 37.33 | 49.7 |
| CDX86873 | Canola | nucleus | 36.0 | 49.69 |
| Solyc11g039950.1.1 | Tomato | nucleus | 37.33 | 47.46 |
| PGSC0003DMT400069054 | Potato | nucleus | 42.22 | 46.34 |
| HORVU1Hr1G055970.27 | Barley | mitochondrion | 30.67 | 33.33 |
| HORVU3Hr1G081860.9 | Barley | mitochondrion | 10.67 | 8.6 |
Protein Annotations
| EnsemblPlants:HORVU1Hr1G065390.1 | EnsemblPlantsGene:HORVU1Hr1G065390 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| PANTHER:PTHR45284 | PFAM:PF00076 | PFscan:PS50102 | SEG:seg | SMART:SM00360 | SUPFAM:SSF54928 |
| UniParc:UPI000B47A19D | UniProt:A0A287FZZ1 | MapMan:16.8.1.2.3.2 | : | : | : |
Description
No Description!
Coordinates
chrchr1H:-:467086028..467088538
Molecular Weight (calculated)
24953.8 Da
IEP (calculated)
10.337
GRAVY (calculated)
-0.416
Length
225 amino acids
Sequence
(BLAST)
(BLAST)
001: LPSRELVRRA VTALLPTAGL LRTPIRLRPR LPDPVSMARN PGCAVYIGNL DEKVSERVLY EILIQVGRVV DLHIPRDKET SRPKGFAFAE YETEEIAQYA
101: VRLFSGLVRL HNRTLKFAIS GQDKASSNAN VTVTPKMNPI PLPNPPQPMR FGDTPVSQHR VVNGRVAGYG ASPNHSYDFH SQASSGVASR GLSDGTYEYS
201: RRVFGSVLND VSRRADRQPV PYPSY
101: VRLFSGLVRL HNRTLKFAIS GQDKASSNAN VTVTPKMNPI PLPNPPQPMR FGDTPVSQHR VVNGRVAGYG ASPNHSYDFH SQASSGVASR GLSDGTYEYS
201: RRVFGSVLND VSRRADRQPV PYPSY
001: MSGTSNCTVY IGNVDERVSD RVLYDIMIQA GRVIDLHIPR DKETDKPKGF AFAEYETEEI ADYAVKLFSG LVSLYNRTLK FAISGQDKLQ SNSANSGHRA
101: RPQSLAFEHS DRAAYHHLER FSSQLISPPS PLPLDYTQEP PPPGVSNGAS LEYSRRVLGS ALDSINHSRP RRY
101: RPQSLAFEHS DRAAYHHLER FSSQLISPPS PLPLDYTQEP PPPGVSNGAS LEYSRRVLGS ALDSINHSRP RRY
Arabidopsis Description
At4g10100 [Source:UniProtKB/TrEMBL;Acc:Q8GW25]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.