Factsheet for Bra037907.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX86873	Canola	nucleus	93.29	93.86
AT4G10110.1	Thale cress	nucleus	76.83	72.83
Os01t0876500-01	Rice	cytosol, nucleus, plastid	41.46	68.0
Solyc10g081990.1.1	Tomato	cytosol	34.76	55.88
KRH34951	Soybean	nucleus	60.37	53.23
HORVU7Hr1G045920.2	Barley	extracellular, nucleus	32.93	52.94
PGSC0003DMT400069054	Potato	nucleus	62.2	49.76
GSMUA_Achr5P01350_001	Banana	cytosol	48.78	49.69
KRG91836	Soybean	nucleus	58.54	48.98
VIT_02s0109g00370.t01	Wine grape	nucleus	54.27	48.63
VIT_18s0089g00220.t01	Wine grape	nucleus	57.32	48.45
Os05t0427300-03	Rice	nucleus	51.22	44.92
HORVU1Hr1G065440.3	Barley	nucleus	51.22	44.44
TraesCS1D01G267400.2	Wheat	nucleus	51.22	44.44
TraesCS1B01G278200.2	Wheat	nucleus	51.22	44.44
TraesCS1A01G267300.1	Wheat	nucleus	50.61	44.38
KXG22055	Sorghum	nucleus	50.61	43.68
Zm00001d038248_P002	Maize	cytosol	47.56	42.62
Zm00001d010213_P001	Maize	extracellular, nucleus	48.78	41.88
HORVU1Hr1G065390.1	Barley	mitochondrion	51.22	37.33
TraesCS3B01G419000.1	Wheat	nucleus	45.73	36.59
Zm00001d042642_P002	Maize	nucleus	37.2	36.09
TraesCS3A01G389800.1	Wheat	cytosol	43.9	35.12
TraesCS3D01G379900.1	Wheat	cytosol, nucleus, plastid	43.29	34.63
HORVU1Hr1G055970.27	Barley	mitochondrion	37.2	29.47
OQU87973	Sorghum	nucleus	41.46	14.38
Zm00001d012239_P003	Maize	nucleus	40.24	14.16

Protein Annotations

EnsemblPlants:Bra037907.1	EnsemblPlants:Bra037907.1-P	EnsemblPlantsGene:Bra037907	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf
InterPro:RRM_dom	PANTHER:PTHR45284	PFAM:PF00076	PFscan:PS50102	SEG:seg	SMART:SM00360
SUPFAM:SSF54928	UniParc:UPI000254241A	UniProt:M4F9Z3	MapMan:16.8.1.2.3.2	:	:

Description

AT4G10110 (E=9e-070) | RNA recognition motif (RRM)-containing protein

Coordinates

chrA09:-:11475672..11481780

Molecular Weight (calculated)

18156.2 Da

IEP (calculated)

6.681

GRAVY (calculated)

-0.568

Length

164 amino acids

Sequence
(BLAST)

001: MSGNTSCTVY IGNVDERVSD RVLYDILIQA GRVIDLHIPR DKETEKPKGF AFAEYETEEI ADYAVKLFSG LVSLYNRTLK FAISGQDKAQ SGSGSGHRTR
101: PQSLSFDHHS ERFSSQLMSS PSPMPLDYTQ EPPPPGVSNG AGLEYSRRVL SSALDINHSR PGRY

Best Arabidopsis Sequence Match ( AT4G10110.1 )
(BLAST)

001: MSGTSNCTVY IGNVDERVSD RVLYDIMIQA GRVIDLHIPR DKETDKPKGF AFAEYETEEI ADYAVKLFSG LVSLYNRTLK FAISGQDKLQ SNSANSGHRA
101: RPQSLAFEHS DRAAYHHLER FSSQLISPPS PLPLDYTQEP PPPGVSNGAS LEYSRRVLGS ALDSINHSRP RRY

Arabidopsis Description

At4g10100 [Source:UniProtKB/TrEMBL;Acc:Q8GW25]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.