Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG22055 | Sorghum | nucleus | 81.28 | 80.0 |
| HORVU1Hr1G065440.3 | Barley | nucleus | 79.68 | 78.84 |
| Zm00001d010213_P001 | Maize | extracellular, nucleus | 80.21 | 78.53 |
| Os01t0876500-01 | Rice | cytosol, nucleus, plastid | 41.71 | 78.0 |
| TraesCS1D01G267400.2 | Wheat | nucleus | 78.61 | 77.78 |
| TraesCS1B01G278200.2 | Wheat | nucleus | 78.61 | 77.78 |
| TraesCS1A01G267300.1 | Wheat | nucleus | 77.01 | 77.01 |
| HORVU1Hr1G065390.1 | Barley | mitochondrion | 79.68 | 66.22 |
| GSMUA_Achr5P01350_001 | Banana | cytosol | 56.68 | 65.84 |
| Zm00001d038248_P002 | Maize | cytosol | 62.03 | 63.39 |
| VIT_02s0109g00370.t01 | Wine grape | nucleus | 53.48 | 54.64 |
| VIT_18s0089g00220.t01 | Wine grape | nucleus | 53.48 | 51.55 |
| Bra037907.1-P | Field mustard | nucleus | 44.92 | 51.22 |
| Solyc10g081990.1.1 | Tomato | cytosol | 27.81 | 50.98 |
| KRH34951 | Soybean | nucleus | 50.27 | 50.54 |
| AT4G10110.1 | Thale cress | nucleus | 46.52 | 50.29 |
| KRG91836 | Soybean | nucleus | 52.41 | 50.0 |
| CDX86873 | Canola | nucleus | 43.32 | 49.69 |
| CDX99527 | Canola | nucleus | 44.38 | 49.11 |
| Solyc11g039950.1.1 | Tomato | nucleus | 45.45 | 48.02 |
| PGSC0003DMT400069054 | Potato | nucleus | 51.34 | 46.83 |
Protein Annotations
| MapMan:16.8.1.2.3.2 | Gene3D:3.30.70.330 | EntrezGene:4338860 | EMBL:AK060130 | EMBL:AK061869 | EMBL:AK104745 |
| EMBL:AK120426 | ProteinID:BAF17521.1 | ProteinID:BAS94128.1 | ProteinID:EEE63794.1 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | EnsemblPlantsGene:Os05g0427300 |
| EnsemblPlants:Os05t0427300-03 | PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR45284 | UniProt:Q0DI02 | InterPro:RBD_domain_sf |
| InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0000E124E3 | RefSeq:XP_015639933.1 | SEG:seg |
Description
Similar to RNA binding protein (Fragment). (Os05t0427300-03);Similar to RNA recognition motif-containing protein. (Os05t0427300-04)
Coordinates
chr5:-:20947600..20951327
Molecular Weight (calculated)
20754.5 Da
IEP (calculated)
9.868
GRAVY (calculated)
-0.568
Length
187 amino acids
Sequence
(BLAST)
(BLAST)
001: MSRNPGCTVF IGNLDEKVPE RVLYEILIQV GRVVDLHIPR DKETNRSKGY AFAEYETEEI AQYAVKLFSG LVRLHNRTLR FAISGQDKQS SNGNIPVTPK
101: VNPIPPPKPA QLMRSSDTPA SQHTVVNGRI AGISPNHSYS AHSEAPSGIS SRGLSNGTYE YSRRVFGSVL NDVSRRTDRQ PIPYPSY
101: VNPIPPPKPA QLMRSSDTPA SQHTVVNGRI AGISPNHSYS AHSEAPSGIS SRGLSNGTYE YSRRVFGSVL NDVSRRTDRQ PIPYPSY
001: MSGTSNCTVY IGNVDERVSD RVLYDIMIQA GRVIDLHIPR DKETDKPKGF AFAEYETEEI ADYAVKLFSG LVSLYNRTLK FAISGQDKLQ SNSANSGHRA
101: RPQSLAFEHS DRAAYHHLER FSSQLISPPS PLPLDYTQEP PPPGVSNGAS LEYSRRVLGS ALDSINHSRP RRY
101: RPQSLAFEHS DRAAYHHLER FSSQLISPPS PLPLDYTQEP PPPGVSNGAS LEYSRRVLGS ALDSINHSRP RRY
Arabidopsis Description
At4g10100 [Source:UniProtKB/TrEMBL;Acc:Q8GW25]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.