Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU1Hr1G065440.3 | Barley | nucleus | 93.58 | 92.59 |
| TraesCS1D01G267400.2 | Wheat | nucleus | 93.58 | 92.59 |
| TraesCS1B01G278200.2 | Wheat | nucleus | 93.05 | 92.06 |
| HORVU1Hr1G065390.1 | Barley | mitochondrion | 93.58 | 77.78 |
| Os05t0427300-03 | Rice | nucleus | 77.01 | 77.01 |
| KXG22055 | Sorghum | nucleus | 76.47 | 75.26 |
| Zm00001d010213_P001 | Maize | extracellular, nucleus | 75.94 | 74.35 |
| GSMUA_Achr5P01350_001 | Banana | cytosol | 55.08 | 63.98 |
| Zm00001d038248_P002 | Maize | cytosol | 59.89 | 61.2 |
| TraesCS3A01G389800.1 | Wheat | cytosol | 60.43 | 55.12 |
| VIT_02s0109g00370.t01 | Wine grape | nucleus | 52.41 | 53.55 |
| Solyc10g081990.1.1 | Tomato | cytosol | 28.88 | 52.94 |
| Bra037907.1-P | Field mustard | nucleus | 44.38 | 50.61 |
| VIT_18s0089g00220.t01 | Wine grape | nucleus | 52.41 | 50.52 |
| CDX99527 | Canola | nucleus | 44.92 | 49.7 |
| AT4G10110.1 | Thale cress | nucleus | 45.45 | 49.13 |
| CDX86873 | Canola | nucleus | 42.78 | 49.08 |
| KRG91836 | Soybean | nucleus | 51.34 | 48.98 |
| KRH34951 | Soybean | nucleus | 48.66 | 48.92 |
| Solyc11g039950.1.1 | Tomato | nucleus | 44.38 | 46.89 |
| PGSC0003DMT400069054 | Potato | nucleus | 51.34 | 46.83 |
| TraesCS3A01G389700.1 | Wheat | mitochondrion | 12.83 | 10.04 |
Protein Annotations
| EnsemblPlants:TraesCS1A01G267300.1 | EnsemblPlantsGene:TraesCS1A01G267300 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | InterPro:RRM_dom | PANTHER:PTHR45284 |
| PFAM:PF00076 | PFscan:PS50102 | SEG:seg | SMART:SM00360 | SUPFAM:SSF54928 | MapMan:16.8.1.2.3.2 |
Description
No Description!
Coordinates
chr1A:-:462435597..462438015
Molecular Weight (calculated)
20811.6 Da
IEP (calculated)
9.669
GRAVY (calculated)
-0.497
Length
187 amino acids
Sequence
(BLAST)
(BLAST)
001: MARNPGCAVY IGNLDEKVSE RVLYEILIQV GRVVDLHIPR DKETSRPKGF AFAEYETEEI AQYAVRLFSG LVRLHNRTLK FAISGQDKAS SNVNVPVTPK
101: MNPLPNPPQP MRFGDTPVSQ HRVVNGRIAG YGVSPNHSYD FHSQASSGVA SRGLSDGTYD YSRRVFGSVL NDVSRRADRQ PVPYPSY
101: MNPLPNPPQP MRFGDTPVSQ HRVVNGRIAG YGVSPNHSYD FHSQASSGVA SRGLSDGTYD YSRRVFGSVL NDVSRRADRQ PVPYPSY
001: MSGTSNCTVY IGNVDERVSD RVLYDIMIQA GRVIDLHIPR DKETDKPKGF AFAEYETEEI ADYAVKLFSG LVSLYNRTLK FAISGQDKLQ SNSANSGHRA
101: RPQSLAFEHS DRAAYHHLER FSSQLISPPS PLPLDYTQEP PPPGVSNGAS LEYSRRVLGS ALDSINHSRP RRY
101: RPQSLAFEHS DRAAYHHLER FSSQLISPPS PLPLDYTQEP PPPGVSNGAS LEYSRRVLGS ALDSINHSRP RRY
Arabidopsis Description
At4g10100 [Source:UniProtKB/TrEMBL;Acc:Q8GW25]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.