CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH34951	Soybean	nucleus	91.33	96.24
Os01t0876500-01	Rice	cytosol, nucleus, plastid	35.2	69.0
VIT_18s0089g00220.t01	Wine grape	nucleus	67.86	68.56
VIT_02s0109g00370.t01	Wine grape	nucleus	60.71	65.03
PGSC0003DMT400069054	Potato	nucleus	64.29	61.46
AT4G10110.1	Thale cress	nucleus	52.04	58.96
CDX86873	Canola	nucleus	48.98	58.9
Bra037907.1-P	Field mustard	nucleus	48.98	58.54
CDX99527	Canola	nucleus	48.98	56.8
GSMUA_Achr5P01350_001	Banana	cytosol	44.39	54.04
HORVU7Hr1G045920.2	Barley	extracellular, nucleus	28.06	53.92
Solyc11g039950.1.1	Tomato	nucleus	48.47	53.67
Os05t0427300-03	Rice	nucleus	50.0	52.41
HORVU1Hr1G065440.3	Barley	nucleus	50.0	51.85
TraesCS1A01G267300.1	Wheat	nucleus	48.98	51.34
TraesCS1D01G267400.2	Wheat	nucleus	48.47	50.26
TraesCS1B01G278200.2	Wheat	nucleus	48.47	50.26
KXG22055	Sorghum	nucleus	48.47	50.0
Zm00001d010213_P001	Maize	extracellular, nucleus	46.43	47.64
HORVU1Hr1G065390.1	Barley	mitochondrion	50.0	43.56
Zm00001d038248_P002	Maize	cytosol	38.78	41.53
TraesCS3A01G389800.1	Wheat	cytosol	42.86	40.98
TraesCS3B01G419000.1	Wheat	nucleus	42.86	40.98
TraesCS3D01G379900.1	Wheat	cytosol, nucleus, plastid	41.84	40.0
Zm00001d042642_P002	Maize	nucleus	34.18	39.65
HORVU1Hr1G055970.27	Barley	mitochondrion	31.12	29.47
OQU87973	Sorghum	nucleus	38.78	16.07
Zm00001d012239_P003	Maize	nucleus	36.73	15.45

Protein Annotations

EntrezGene:100803118	MapMan:16.8.1.2.3.2	Gene3D:3.30.70.330	EMBL:ACUP02012708	EnsemblPlantsGene:GLYMA_20G177100	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	UniProt:K7N448
EnsemblPlants:KRG91836	ProteinID:KRG91836	ProteinID:KRG91836.1	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102
PANTHER:PTHR45284	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI000233DA0C
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr20:+:41419957..41423836

Molecular Weight (calculated)

21980.4 Da

IEP (calculated)

8.818

GRAVY (calculated)

-0.699

Length

196 amino acids

Sequence
(BLAST)

001: MSGNSNCSVY IGNLDERVTD RVLYDILIQA GRVVDLHIPK DKESEKPKGF AFAEYETEEI ADYAVRLFSG LITLYNRTLK FAISGRDKTT SNGSTAIAPT
101: LNSSQRPRPY PVPINNSENF QHPARLSTPD RFSDYPVNNS QVLPSRVTDQ SSGYGSHYSG NNYEYSRRAF GATLDSISRS RSRHFDKSSP ISYPSY

Best Arabidopsis Sequence Match ( AT4G10110.1 )
(BLAST)

001: MSGTSNCTVY IGNVDERVSD RVLYDIMIQA GRVIDLHIPR DKETDKPKGF AFAEYETEEI ADYAVKLFSG LVSLYNRTLK FAISGQDKLQ SNSANSGHRA
101: RPQSLAFEHS DRAAYHHLER FSSQLISPPS PLPLDYTQEP PPPGVSNGAS LEYSRRVLGS ALDSINHSRP RRY

Arabidopsis Description

At4g10100 [Source:UniProtKB/TrEMBL;Acc:Q8GW25]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.