Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d010213_P001 | Maize | extracellular, nucleus | 91.05 | 90.58 |
| Os05t0427300-03 | Rice | nucleus | 80.0 | 81.28 |
| HORVU1Hr1G065440.3 | Barley | nucleus | 76.84 | 77.25 |
| TraesCS1A01G267300.1 | Wheat | nucleus | 75.26 | 76.47 |
| TraesCS1D01G267400.2 | Wheat | nucleus | 75.26 | 75.66 |
| TraesCS1B01G278200.2 | Wheat | nucleus | 75.26 | 75.66 |
| Zm00001d038248_P002 | Maize | cytosol | 70.0 | 72.68 |
| HORVU1Hr1G065390.1 | Barley | mitochondrion | 76.84 | 64.89 |
| GSMUA_Achr5P01350_001 | Banana | cytosol | 53.16 | 62.73 |
| VIT_02s0109g00370.t01 | Wine grape | nucleus | 50.53 | 52.46 |
| Solyc10g081990.1.1 | Tomato | cytosol | 27.37 | 50.98 |
| Bra037907.1-P | Field mustard | nucleus | 43.68 | 50.61 |
| VIT_18s0089g00220.t01 | Wine grape | nucleus | 51.05 | 50.0 |
| AT4G10110.1 | Thale cress | nucleus | 45.26 | 49.71 |
| CDX99527 | Canola | nucleus | 44.21 | 49.7 |
| CDX86873 | Canola | nucleus | 42.63 | 49.69 |
| Solyc11g039950.1.1 | Tomato | nucleus | 45.26 | 48.59 |
| KRG91836 | Soybean | nucleus | 50.0 | 48.47 |
| KRH34951 | Soybean | nucleus | 46.84 | 47.85 |
| PGSC0003DMT400069054 | Potato | nucleus | 51.05 | 47.32 |
| OQU87973 | Sorghum | nucleus | 48.95 | 19.66 |
Protein Annotations
| EnsemblPlants:KXG22055 | EnsemblPlantsGene:SORBI_3009G146100 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| PANTHER:PTHR45284 | PFAM:PF00076 | PFscan:PS50102 | ProteinID:KXG22055 | ProteinID:KXG22055.1 | SMART:SM00360 |
| SUPFAM:SSF54928 | UniParc:UPI0001C80544 | UniProt:A0A1B6P957 | MapMan:16.8.1.2.3.2 | : | : |
Description
hypothetical protein
Coordinates
chr9:-:50302156..50313255
Molecular Weight (calculated)
21110.8 Da
IEP (calculated)
9.670
GRAVY (calculated)
-0.675
Length
190 amino acids
Sequence
(BLAST)
(BLAST)
001: MARNPGCTVF IGNLDDRVPE RVLYEILIQV GRVVDLHIPR DKETSRPKGY AFAEYETEEI AQYAVKLFSG LVRLQNKTLR FAISGQDKPS SNGNIPVTPR
101: LNSVPQPKHP QHMRSSDTPL PQHTATNGRS TGYGISPNHS YDAHSQAPSS GLPNRGLSNG TYEYSRRVFG SVLNDVSRQA TREAIPYPSY
101: LNSVPQPKHP QHMRSSDTPL PQHTATNGRS TGYGISPNHS YDAHSQAPSS GLPNRGLSNG TYEYSRRVFG SVLNDVSRQA TREAIPYPSY
001: MSGTSNCTVY IGNVDERVSD RVLYDIMIQA GRVIDLHIPR DKETDKPKGF AFAEYETEEI ADYAVKLFSG LVSLYNRTLK FAISGQDKLQ SNSANSGHRA
101: RPQSLAFEHS DRAAYHHLER FSSQLISPPS PLPLDYTQEP PPPGVSNGAS LEYSRRVLGS ALDSINHSRP RRY
101: RPQSLAFEHS DRAAYHHLER FSSQLISPPS PLPLDYTQEP PPPGVSNGAS LEYSRRVLGS ALDSINHSRP RRY
Arabidopsis Description
At4g10100 [Source:UniProtKB/TrEMBL;Acc:Q8GW25]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.