Factsheet for VIT_02s0109g00370.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_18s0089g00220.t01	Wine grape	nucleus	74.86	70.62
Os01t0876500-01	Rice	cytosol, nucleus, plastid	37.16	68.0
KRG91836	Soybean	nucleus	65.03	60.71
KRH34951	Soybean	nucleus	61.2	60.22
GSMUA_Achr5P01350_001	Banana	cytosol	49.73	56.52
PGSC0003DMT400069054	Potato	nucleus	62.84	56.1
CDX99527	Canola	nucleus	51.37	55.62
CDX86873	Canola	nucleus	49.18	55.21
AT4G10110.1	Thale cress	nucleus	51.37	54.34
Bra037907.1-P	Field mustard	nucleus	48.63	54.27
HORVU7Hr1G045920.2	Barley	extracellular, nucleus	30.05	53.92
Os05t0427300-03	Rice	nucleus	54.64	53.48
TraesCS1A01G267300.1	Wheat	nucleus	53.55	52.41
Solyc11g039950.1.1	Tomato	nucleus	50.27	51.98
HORVU1Hr1G065440.3	Barley	nucleus	53.01	51.32
TraesCS1B01G278200.2	Wheat	nucleus	53.01	51.32
TraesCS1D01G267400.2	Wheat	nucleus	53.01	51.32
KXG22055	Sorghum	nucleus	52.46	50.53
Zm00001d010213_P001	Maize	extracellular, nucleus	51.91	49.74
Zm00001d038248_P002	Maize	cytosol	43.17	43.17
HORVU1Hr1G065390.1	Barley	mitochondrion	53.01	43.11
TraesCS3B01G419000.1	Wheat	nucleus	45.9	40.98
TraesCS3A01G389800.1	Wheat	cytosol	43.17	38.54
TraesCS3D01G379900.1	Wheat	cytosol, nucleus, plastid	42.62	38.05
Zm00001d042642_P002	Maize	nucleus	34.43	37.28
HORVU1Hr1G055970.27	Barley	mitochondrion	31.15	27.54
Zm00001d012239_P003	Maize	nucleus	37.7	14.81
OQU87973	Sorghum	nucleus	37.7	14.59

Protein Annotations

EntrezGene:100252755	wikigene:100252755	MapMan:16.8.1.2.3.2	Gene3D:3.30.70.330	UniProt:A5BAJ7	EMBL:AM452377
ProteinID:CAN76637	ProteinID:CAN76637.1	ProteinID:CBI23264	ProteinID:CBI23264.3	EMBL:FN595250	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	EntrezGene:LOC100252755
wikigene:LOC100252755	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR45284	InterPro:RBD_domain_sf
InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI0001520533	ArrayExpress:VIT_02s0109g00370	EnsemblPlantsGene:VIT_02s0109g00370
EnsemblPlants:VIT_02s0109g00370.t01	RefSeq:XP_002274629	RefSeq:XP_002274629.2	SEG:seg	:	:

Description

No Description!

Coordinates

chr2:-:13051596..13055990

Molecular Weight (calculated)

20677.1 Da

IEP (calculated)

8.188

GRAVY (calculated)

-0.670

Length

183 amino acids

Sequence
(BLAST)

001: MSTKSGCAVY IGNLDERVSE RVLYDILIQV GRVVDLYIPR DKETERPKGY AFAEYETEEI AEYAVKLFSG LVTLYNRTLK FAISGQDKPS PAAITPRHHV
101: PYNNMESSQH SMGLKTPCRL SAHPVNNAQA SSDVLHQPNR NSSQHDGNNY DYSRRVFGAT LDNISRSRSR YYDSSSPVTY PSY

Best Arabidopsis Sequence Match ( AT4G10110.1 )
(BLAST)

001: MSGTSNCTVY IGNVDERVSD RVLYDIMIQA GRVIDLHIPR DKETDKPKGF AFAEYETEEI ADYAVKLFSG LVSLYNRTLK FAISGQDKLQ SNSANSGHRA
101: RPQSLAFEHS DRAAYHHLER FSSQLISPPS PLPLDYTQEP PPPGVSNGAS LEYSRRVLGS ALDSINHSRP RRY

Arabidopsis Description

At4g10100 [Source:UniProtKB/TrEMBL;Acc:Q8GW25]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.