Factsheet for VIT_18s0089g00220.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_02s0109g00370.t01	Wine grape	nucleus	70.62	74.86
KRH34951	Soybean	nucleus	67.01	69.89
KRG91836	Soybean	nucleus	68.56	67.86
Os01t0876500-01	Rice	cytosol, nucleus, plastid	34.54	67.0
PGSC0003DMT400069054	Potato	nucleus	63.4	60.0
AT4G10110.1	Thale cress	nucleus	52.58	58.96
GSMUA_Achr5P01350_001	Banana	cytosol	47.94	57.76
CDX86873	Canola	nucleus	48.45	57.67
Bra037907.1-P	Field mustard	nucleus	48.45	57.32
CDX99527	Canola	nucleus	48.97	56.21
Solyc11g039950.1.1	Tomato	nucleus	50.52	55.37
HORVU7Hr1G045920.2	Barley	extracellular, nucleus	28.87	54.9
Os05t0427300-03	Rice	nucleus	51.55	53.48
HORVU1Hr1G065440.3	Barley	nucleus	51.55	52.91
TraesCS1A01G267300.1	Wheat	nucleus	50.52	52.41
TraesCS1B01G278200.2	Wheat	nucleus	50.0	51.32
TraesCS1D01G267400.2	Wheat	nucleus	50.0	51.32
KXG22055	Sorghum	nucleus	50.0	51.05
Zm00001d010213_P001	Maize	extracellular, nucleus	49.48	50.26
HORVU1Hr1G065390.1	Barley	mitochondrion	51.55	44.44
Zm00001d038248_P002	Maize	cytosol	40.72	43.17
TraesCS3B01G419000.1	Wheat	nucleus	44.33	41.95
TraesCS3A01G389800.1	Wheat	cytosol	42.27	40.0
TraesCS3D01G379900.1	Wheat	cytosol, nucleus, plastid	41.75	39.51
Zm00001d042642_P002	Maize	nucleus	34.02	39.05
HORVU1Hr1G055970.27	Barley	mitochondrion	30.93	28.99
Zm00001d012239_P003	Maize	nucleus	36.6	15.24
OQU87973	Sorghum	nucleus	35.05	14.38

Protein Annotations

EntrezGene:100244774	wikigene:100244774	MapMan:16.8.1.2.3.2	Gene3D:3.30.70.330	ProteinID:CBI17037	ProteinID:CBI17037.3
UniProt:D7SN08	EMBL:FN594956	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
InterPro:IPR000504	InterPro:IPR012677	EntrezGene:LOC100244774	wikigene:LOC100244774	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076
PFscan:PS50102	PANTHER:PTHR45284	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928
TIGR:TC67757	UniParc:UPI00015CBFA0	ArrayExpress:VIT_18s0089g00220	EnsemblPlantsGene:VIT_18s0089g00220	EnsemblPlants:VIT_18s0089g00220.t01	unigene:Vvi.546
RefSeq:XP_002271789	RefSeq:XP_002271789.1	:	:	:	:

Description

No Description!

Coordinates

chr18:-:27960688..27964968

Molecular Weight (calculated)

21705.3 Da

IEP (calculated)

7.651

GRAVY (calculated)

-0.585

Length

194 amino acids

Sequence
(BLAST)

001: MSAKSGCSVY IGNLDERVSD RVLYDILIQA GRVVDLYIPR DKETDRPKGF AFAEYETEEI ADYAVKLFSG LVTLYNRTLK FAISGQDKPS SAAITPTSNS
101: SLEPKPHPVP FNNMENSQHS MGLRTPCRLA AHPVNYAQVP ASSDTLHQPN RYSSQLDGHS YDYSRRVFGA TLDSISRTRS RYHDSSNPIT YPSY

Best Arabidopsis Sequence Match ( AT4G10110.1 )
(BLAST)

001: MSGTSNCTVY IGNVDERVSD RVLYDIMIQA GRVIDLHIPR DKETDKPKGF AFAEYETEEI ADYAVKLFSG LVSLYNRTLK FAISGQDKLQ SNSANSGHRA
101: RPQSLAFEHS DRAAYHHLER FSSQLISPPS PLPLDYTQEP PPPGVSNGAS LEYSRRVLGS ALDSINHSRP RRY

Arabidopsis Description

At4g10100 [Source:UniProtKB/TrEMBL;Acc:Q8GW25]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.