Factsheet for PGSC0003DMT400069054

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g039950.1.1	Tomato	nucleus	65.85	76.27
Os01t0876500-01	Rice	cytosol, nucleus, plastid	35.61	73.0
KRH34951	Soybean	nucleus	59.02	65.05
KRG91836	Soybean	nucleus	61.46	64.29
VIT_18s0089g00220.t01	Wine grape	nucleus	60.0	63.4
CDX86873	Canola	nucleus	50.24	63.19
AT4G10110.1	Thale cress	nucleus	53.17	63.01
VIT_02s0109g00370.t01	Wine grape	nucleus	56.1	62.84
Bra037907.1-P	Field mustard	nucleus	49.76	62.2
CDX99527	Canola	nucleus	50.24	60.95
HORVU7Hr1G045920.2	Barley	extracellular, nucleus	27.32	54.9
GSMUA_Achr5P01350_001	Banana	cytosol	42.93	54.66
Os05t0427300-03	Rice	nucleus	46.83	51.34
TraesCS1A01G267300.1	Wheat	nucleus	46.83	51.34
KXG22055	Sorghum	nucleus	47.32	51.05
HORVU1Hr1G065440.3	Barley	nucleus	46.34	50.26
TraesCS1B01G278200.2	Wheat	nucleus	45.85	49.74
TraesCS1D01G267400.2	Wheat	nucleus	45.85	49.74
Zm00001d010213_P001	Maize	extracellular, nucleus	45.85	49.21
Zm00001d038248_P002	Maize	cytosol	40.98	45.9
TraesCS3B01G419000.1	Wheat	nucleus	43.9	43.9
TraesCS3A01G389800.1	Wheat	cytosol	42.93	42.93
TraesCS3D01G379900.1	Wheat	cytosol, nucleus, plastid	42.44	42.44
HORVU1Hr1G065390.1	Barley	mitochondrion	46.34	42.22
Zm00001d042642_P002	Maize	nucleus	33.17	40.24
HORVU1Hr1G055970.27	Barley	mitochondrion	28.29	28.02
OQU87973	Sorghum	nucleus	37.07	16.07
Zm00001d012239_P003	Maize	nucleus	35.61	15.67

Protein Annotations

EnsemblPlants:PGSC0003DMT400069054	EnsemblPlantsGene:PGSC0003DMG400026862	EntrezGene:102602409	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf
InterPro:RRM_dom	PANTHER:PTHR45284	PFAM:PF00076	PFscan:PS50102	PGSC:PGSC0003DMG400026862	RefSeq:XP_015168104.1
SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI0002955055	UniProt:M1CJV7	MapMan:16.8.1.2.3.2	:

Description

RNA recognition motif-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400026862]

Coordinates

chr11:-:20896597..20899827

Molecular Weight (calculated)

23109.8 Da

IEP (calculated)

7.419

GRAVY (calculated)

-0.703

Length

205 amino acids

Sequence
(BLAST)

001: MAENPNCTVY VGNLDERVCD RVLYDILIQA GRVVDLYIPR DKETDKPKGF AFAKYETEEI ADYAVKLFSG LVTLYNRTLK FAISGQDKPS NNSPIATLPA
101: LNIPSRPRPH PTPYNDKEIS PNSARLSTSC WFSQHQTNYT QVPVPPGVSV NQSNGYRSPY DGYRSHYDGN NYDYDQRVFG AALDSITSSR LGRYDPRSPT
201: SYPSY

Best Arabidopsis Sequence Match ( AT4G10110.1 )
(BLAST)

001: MSGTSNCTVY IGNVDERVSD RVLYDIMIQA GRVIDLHIPR DKETDKPKGF AFAEYETEEI ADYAVKLFSG LVSLYNRTLK FAISGQDKLQ SNSANSGHRA
101: RPQSLAFEHS DRAAYHHLER FSSQLISPPS PLPLDYTQEP PPPGVSNGAS LEYSRRVLGS ALDSINHSRP RRY

Arabidopsis Description

At4g10100 [Source:UniProtKB/TrEMBL;Acc:Q8GW25]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.