CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 2
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH35682	Soybean	nucleus	98.53	98.53
KRG91104	Soybean	nucleus	95.88	94.77
VIT_03s0091g00710.t01	Wine grape	cytosol	87.65	88.43
Solyc01g107160.2.1	Tomato	nucleus	86.76	86.76
PGSC0003DMT400066160	Potato	extracellular	86.47	86.47
Os03t0448600-01	Rice	cytosol	82.35	81.63
EER87819	Sorghum	cytosol	81.76	81.05
TraesCS4A01G058600.1	Wheat	cytosol, plastid	80.88	79.71
TraesCS4D01G245500.2	Wheat	cytosol, plastid	80.59	79.42
TraesCS4B01G246100.1	Wheat	cytosol	67.35	74.59
KRH35672	Soybean	cytosol	26.47	68.7
HORVU4Hr1G067810.1	Barley	plastid	80.59	68.5
Os07t0588500-00	Rice	cytosol	68.24	63.74
TraesCS2A01G194000.1	Wheat	cytosol	62.65	61.56
TraesCS2D01G193800.1	Wheat	cytosol	61.76	61.4
TraesCS2B01G212800.1	Wheat	cytosol	62.06	60.81
KRH74957	Soybean	cytosol	35.29	36.36
KRH70829	Soybean	cytosol	35.29	36.36
GSMUA_Achr4P03390_001	Banana	extracellular	44.71	35.93
KRH43922	Soybean	nucleus	32.65	31.99
KRH10504	Soybean	cytosol, plastid	32.65	31.99
KRH71020	Soybean	cytosol, plastid	31.76	31.12
KRH75181	Soybean	nucleus	31.47	30.84

Protein Annotations

EntrezGene:100818414	MapMan:13.3.5.5.2	Gene3D:2.130.10.10	EMBL:ACUP02012660	InterPro:G-protein_beta_WD-40_rep	EnsemblPlantsGene:GLYMA_20G132800
GO:GO:0000776	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0007049	GO:GO:0007094	GO:GO:0008150
GO:GO:0009524	GO:GO:0009987	GO:GO:0016043	GO:GO:0033597	GO:GO:0043130	GO:GO:1990298
UniProt:I1NG17	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	EnsemblPlants:KRG91092	ProteinID:KRG91092
ProteinID:KRG91092.1	PFAM:PF00400	PRINTS:PR00320	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR10971
PANTHER:PTHR10971:SF24	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI000233DCEF	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat
InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr20:-:37292976..37296808

Molecular Weight (calculated)

37759.3 Da

IEP (calculated)

8.365

GRAVY (calculated)

-0.425

Length

340 amino acids

Sequence
(BLAST)

001: MASAVPATGR ELSNPPLDGI TNLRFSNHSD HLLVSSWDKS VRLYDASANV LRGEFMHAGP VLDCCFHDDS SGFSVAADNT VRRLVFSSNK EDILGRHDAP
101: VRCVEYSYAA GQLITGSWDK TLKCWDPRGA SGQERTLVGT YPQAERVYSL SLVGHRLVVA TAGRHVNIYD LRNMSQPEQR RESSLKYQTR CVHCYPNGTG
201: YALSSVEGRV AMEFFDLSEA SQAKKYAFKC HRKSEAGRDI VYPVNAIAFH PIYGTFATGG CDGYVNVWDG NNKKRLYQYS KYPTSVAALS FSRDGRLLAV
301: ASSYTFEDGP KSQEQDAIFV RSVNEIEVKP KPKVYPNPPV

Best Arabidopsis Sequence Match ( AT3G19590.1 )
(BLAST)

001: MTTVTPSAGR ELSNPPSDGI SNLRFSNNSD HLLVSSWDKR VRLYDVSTNS LKGEFLHGGA VLDCCFHDDF SGFSVGADYK VRRIVFNVGK EDILGTHDKA
101: VRCVEYSYAA GQVITGSWDK TVKCWDPRGA SGPERTQVGT YLQPERVYSM SLVGHRLVVA TAGRHVNIYD LRNMSQPEQR RESSLKYQTR CVRCYPNGTG
201: YALSSVEGRV AMEFFDLSEA AQAKKYAFKC HRKSEAGRDI VYPVNSIAFH PIYGTFATGG CDGFVNIWDG NNKKRLYQYS KYPTSISALS FSRDGQLLAV
301: ASSYTFEEGE KSQEPEAIFV RSVNEIEVKP KPKVYPNPAA

Arabidopsis Description

BUB3.1BUB3.1 [Source:UniProtKB/TrEMBL;Acc:A0A178VA46]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.