CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 2
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH35682	Soybean	nucleus	96.22	97.35
KRG91092	Soybean	nucleus	94.77	95.88
VIT_03s0091g00710.t01	Wine grape	cytosol	87.21	89.02
PGSC0003DMT400066160	Potato	extracellular	86.92	87.94
Solyc01g107160.2.1	Tomato	nucleus	86.63	87.65
Os03t0448600-01	Rice	cytosol	81.98	82.22
EER87819	Sorghum	cytosol	81.69	81.92
TraesCS4A01G058600.1	Wheat	cytosol, plastid	81.1	80.87
TraesCS4D01G245500.2	Wheat	cytosol, plastid	80.81	80.58
TraesCS4B01G246100.1	Wheat	cytosol	67.44	75.57
KRH35672	Soybean	cytosol	27.03	70.99
HORVU4Hr1G067810.1	Barley	plastid	80.81	69.5
Os07t0588500-00	Rice	cytosol	68.31	64.56
TraesCS2A01G194000.1	Wheat	cytosol	62.21	61.85
TraesCS2D01G193800.1	Wheat	cytosol	61.34	61.7
TraesCS2B01G212800.1	Wheat	cytosol	61.63	61.1
KRH74957	Soybean	cytosol	35.17	36.67
KRH70829	Soybean	cytosol	35.17	36.67
GSMUA_Achr4P03390_001	Banana	extracellular	45.06	36.64
KRH71020	Soybean	cytosol, plastid	32.85	32.56
KRH75181	Soybean	nucleus	32.56	32.28
KRH10504	Soybean	cytosol, plastid	32.27	31.99
KRH43922	Soybean	nucleus	31.98	31.7

Protein Annotations

EntrezGene:100820541	MapMan:13.3.5.5.2	Gene3D:2.130.10.10	EMBL:ACUP02012661	EMBL:BT098031	UniProt:C6TK27
InterPro:G-protein_beta_WD-40_rep	EnsemblPlantsGene:GLYMA_20G133400	GO:GO:0000776	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0007049
GO:GO:0007094	GO:GO:0008150	GO:GO:0009524	GO:GO:0009987	GO:GO:0016043	GO:GO:0033597
GO:GO:0043130	GO:GO:1990298	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	EnsemblPlants:KRG91104
ProteinID:KRG91104	ProteinID:KRG91104.1	PFAM:PF00400	PRINTS:PR00320	PFscan:PS50082	PFscan:PS50294
PANTHER:PTHR10971	PANTHER:PTHR10971:SF24	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0001B169E7	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr20:-:37346612..37349673

Molecular Weight (calculated)

38168.8 Da

IEP (calculated)

8.514

GRAVY (calculated)

-0.464

Length

344 amino acids

Sequence
(BLAST)

001: MATAVLTTGR ELSNPPSDGI TNLRFSNHSD HLLVSSWDKS VRLYDASANV LRGEFMHAGP VLDCCFHDDS SGFSAAADNT VRRLVFSSNK EDILGRHDAP
101: VRCIEYSYAA GQLITGSWDK TLKCWDPRGA SGQERTLVGT YPQPERVYSL SLVGHRLVVA TAGRHVNIYD LRNMSQPEQR RESSLKYQTR CVRCYPNGTG
201: YALSSVEGRV AMEFFDLSEA SQAKKYAFKC HRKSEAGRDI VYPVNAIAFH PIYGTFATGG CDGYVNVWDG NNKKRLYQYS KYPTSIAALS FSRDGRLLAV
301: ASSYTFEEGP KAGTKADEQD AIYVRSVNEI EVKPKPKVYP NPPA

Best Arabidopsis Sequence Match ( AT3G19590.1 )
(BLAST)

001: MTTVTPSAGR ELSNPPSDGI SNLRFSNNSD HLLVSSWDKR VRLYDVSTNS LKGEFLHGGA VLDCCFHDDF SGFSVGADYK VRRIVFNVGK EDILGTHDKA
101: VRCVEYSYAA GQVITGSWDK TVKCWDPRGA SGPERTQVGT YLQPERVYSM SLVGHRLVVA TAGRHVNIYD LRNMSQPEQR RESSLKYQTR CVRCYPNGTG
201: YALSSVEGRV AMEFFDLSEA AQAKKYAFKC HRKSEAGRDI VYPVNSIAFH PIYGTFATGG CDGFVNIWDG NNKKRLYQYS KYPTSISALS FSRDGQLLAV
301: ASSYTFEEGE KSQEPEAIFV RSVNEIEVKP KPKVYPNPAA

Arabidopsis Description

BUB3.1BUB3.1 [Source:UniProtKB/TrEMBL;Acc:A0A178VA46]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.