Subcellular Localization
min:
: max
Winner_takes_all: plastid, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G058600.1 | Wheat | cytosol, plastid | 99.71 | 99.71 |
| TraesCS4B01G246100.1 | Wheat | cytosol | 82.9 | 93.16 |
| Os03t0448600-01 | Rice | cytosol | 90.43 | 90.96 |
| EER87819 | Sorghum | cytosol | 90.14 | 90.67 |
| HORVU4Hr1G067810.1 | Barley | plastid | 98.55 | 85.0 |
| Solyc01g107160.2.1 | Tomato | nucleus | 81.74 | 82.94 |
| PGSC0003DMT400066160 | Potato | extracellular | 81.45 | 82.65 |
| VIT_03s0091g00710.t01 | Wine grape | cytosol | 80.58 | 82.49 |
| KRH35682 | Soybean | nucleus | 80.58 | 81.76 |
| Bra038220.1-P | Field mustard | cytosol, plastid | 80.29 | 81.47 |
| CDX95434 | Canola | cytosol, plastid | 80.29 | 81.47 |
| CDY42193 | Canola | cytosol, plastid | 80.29 | 81.47 |
| AT1G49910.1 | Thale cress | cytosol | 79.42 | 80.83 |
| KRG91104 | Soybean | nucleus | 80.58 | 80.81 |
| KRG91092 | Soybean | nucleus | 79.42 | 80.59 |
| CDY59371 | Canola | cytosol, plastid | 79.13 | 80.53 |
| Bra014226.1-P | Field mustard | cytosol, plastid | 78.84 | 80.24 |
| CDY03579 | Canola | cytosol, plastid | 78.84 | 80.0 |
| AT3G19590.1 | Thale cress | cytosol | 78.55 | 79.71 |
| KRH35672 | Soybean | cytosol | 24.06 | 63.36 |
| TraesCS2D01G193800.1 | Wheat | cytosol | 61.45 | 61.99 |
| GSMUA_Achr4P03390_001 | Banana | extracellular | 42.32 | 34.52 |
| TraesCS3D01G224200.1 | Wheat | plastid | 33.62 | 33.62 |
| TraesCS1D01G034200.1 | Wheat | plastid | 33.04 | 33.24 |
| TraesCS5D01G406300.1 | Wheat | mitochondrion | 29.86 | 31.99 |
Protein Annotations
| MapMan:13.3.5.5.2 | Gene3D:2.130.10.10 | InterPro:G-protein_beta_WD-40_rep | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR001680 | InterPro:IPR015943 | InterPro:IPR017986 | PFAM:PF00400 | PRINTS:PR00320 | PFscan:PS50082 |
| PFscan:PS50294 | PANTHER:PTHR10971 | PANTHER:PTHR10971:SF24 | SMART:SM00320 | SUPFAM:SSF50978 | EnsemblPlantsGene:TraesCS4D01G245500 |
| EnsemblPlants:TraesCS4D01G245500.2 | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf | SEG:seg |
Description
No Description!
Coordinates
chr4D:-:414151321..414158117
Molecular Weight (calculated)
37757.1 Da
IEP (calculated)
7.844
GRAVY (calculated)
-0.452
Length
345 amino acids
Sequence
(BLAST)
(BLAST)
001: MSDAPGAAAS AMGSGRELAN PPSDGISNLR FSNHSDHLLV SSWDKTVRLY DAEASLLKGE FAHPGPVLDC CFHDDSSGFS AGADHTVRRL SFTSSKEDVL
101: GRHDAPVRCV EYSYAAGQVI TGSWDKTIKC WDPRGVSGPE RTLVGTYAQP ERVYSMSLVG NRLVVATAGR HVSIYDLRNM SQPEQKRESS LKYQTRCVRC
201: FPNGTGYALS SVEGRVSMEF FDLSESAQSK KYAFKCHRKS ESGRDTVYPV NAIAFHPIYG TFATGGHDGF VNVWDGTNKK RLYQYSKYAS SIAALSFSKD
301: GHLLAVASSY GYEEGEKPHE PDAIFIRGVN EVEVKPKPKA LAAPQ
101: GRHDAPVRCV EYSYAAGQVI TGSWDKTIKC WDPRGVSGPE RTLVGTYAQP ERVYSMSLVG NRLVVATAGR HVSIYDLRNM SQPEQKRESS LKYQTRCVRC
201: FPNGTGYALS SVEGRVSMEF FDLSESAQSK KYAFKCHRKS ESGRDTVYPV NAIAFHPIYG TFATGGHDGF VNVWDGTNKK RLYQYSKYAS SIAALSFSKD
301: GHLLAVASSY GYEEGEKPHE PDAIFIRGVN EVEVKPKPKA LAAPQ
001: MTLVPAIGRE LSNPPSDGIS NLRFSNNSDH LLVSSWDKSV RLYDANGDLM RGEFKHGGAV LDCCFHDDSS GFSVCADTKV RRIDFNAGKE DVLGTHEKPV
101: RCVEYSYAAG QVITGSWDKT IKCWDPRGAS GTERTQIGTY MQPERVNSLS LVGNRLVVAT AGRHVNIYDL RNMSQPEQRR ESSLKYQTRC VRCYPNGTGY
201: ALSSVEGRVS MEFFDLSEAA QAKKYAFKCH RKSEDGRDIV YPVNAIAFHP IYGTFASGGC DGFVNIWDGN NKKRLYQYSK YPTSIAALSF SRDGGLLAVA
301: SSYTFEEGDK PHEPDAIFVR SVNEIEVKPK PKVYPNPPV
101: RCVEYSYAAG QVITGSWDKT IKCWDPRGAS GTERTQIGTY MQPERVNSLS LVGNRLVVAT AGRHVNIYDL RNMSQPEQRR ESSLKYQTRC VRCYPNGTGY
201: ALSSVEGRVS MEFFDLSEAA QAKKYAFKCH RKSEDGRDIV YPVNAIAFHP IYGTFASGGC DGFVNIWDGN NKKRLYQYSK YPTSIAALSF SRDGGLLAVA
301: SSYTFEEGDK PHEPDAIFVR SVNEIEVKPK PKVYPNPPV
Arabidopsis Description
BUB3.2BUB3.2 [Source:UniProtKB/TrEMBL;Acc:A0A178W7L6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.