Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS1A01G378900.1 | |
| TraesCS1B01G400200.1 | |
| TraesCS1D01G386100.1 | |
| TraesCS2A01G194000.1 | nucleus |
| TraesCS2A01G196600.1 | |
| TraesCS2A01G320000.1 | nucleus |
| TraesCS2B01G212800.1 | nucleus |
| TraesCS2B01G224200.1 | |
| TraesCS2B01G363300.1 | nucleus |
| TraesCS2D01G193800.1 | nucleus |
| TraesCS2D01G204600.1 | |
| TraesCS2D01G343300.1 | nucleus |
| TraesCS3A01G264600.1 | |
| TraesCS3B01G297900.1 | |
| TraesCS3D01G264700.2 | |
| TraesCS4A01G058600.1 | nucleus |
| TraesCS4B01G246100.1 | nucleus |
| TraesCS4D01G245500.2 | nucleus |
| TraesCS5A01G142400.1 | nucleus |
| TraesCS5B01G141100.1 | nucleus |
| TraesCS5D01G149700.1 | nucleus |
| TraesCS6A01G089500.2 | |
| TraesCS6B01G111900.1 | |
| TraesCSU01G016800.1 | |
| TraesCSU01G188700.1 | nucleus |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCSU01G016800.1 | Wheat | nucleus | 94.53 | 94.18 |
| TraesCS6B01G111900.1 | Wheat | nucleus | 94.34 | 94.17 |
| Os02t0126300-01 | Rice | plasma membrane | 62.59 | 61.36 |
| EES06214 | Sorghum | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 63.14 | 59.15 |
| Zm00001d053956_P001 | Maize | nucleus | 60.04 | 55.2 |
| Zm00001d015096_P002 | Maize | nucleus | 60.77 | 54.5 |
| Bra010069.1-P | Field mustard | nucleus | 37.96 | 38.59 |
| CDX86911 | Canola | nucleus | 37.96 | 38.59 |
| CDY00270 | Canola | nucleus | 37.59 | 38.22 |
| CDX87240 | Canola | nucleus | 36.86 | 37.34 |
| Bra035900.1-P | Field mustard | nucleus | 36.68 | 37.15 |
| CDY16786 | Canola | nucleus | 36.68 | 37.02 |
| AT5G62250.1 | Thale cress | nucleus | 36.86 | 36.79 |
| VIT_15s0048g00860.t01 | Wine grape | cytosol, nucleus, plasma membrane | 39.23 | 35.89 |
| TraesCS3A01G264600.1 | Wheat | cytosol | 44.16 | 35.12 |
| TraesCS1A01G378900.1 | Wheat | cytosol | 43.25 | 35.01 |
| TraesCS7A01G405500.1 | Wheat | cytosol | 36.5 | 34.48 |
| VIT_16s0022g01820.t01 | Wine grape | nucleus | 45.8 | 34.38 |
| KRH38719 | Soybean | cytosol | 40.15 | 34.16 |
| AT5G51600.1 | Thale cress | cytosol | 43.43 | 33.66 |
| Bra028266.1-P | Field mustard | cytosol | 43.43 | 33.66 |
| Bra023930.1-P | Field mustard | cytosol | 43.43 | 33.57 |
| PGSC0003DMT400070431 | Potato | nucleus | 42.34 | 33.43 |
| TraesCS6A01G282800.1 | Wheat | cytosol | 35.4 | 33.05 |
| PGSC0003DMT400079660 | Potato | cytosol | 44.71 | 32.89 |
| TraesCS7A01G223100.1 | Wheat | cytosol, nucleus, plastid | 35.58 | 32.88 |
| TraesCS1A01G256800.1 | Wheat | nucleus | 34.31 | 32.64 |
| Solyc03g007130.2.1 | Tomato | nucleus | 43.8 | 32.39 |
| KRG92454 | Soybean | nucleus | 42.52 | 32.05 |
| KRH34346 | Soybean | cytosol | 43.43 | 31.95 |
| Solyc11g072280.1.1 | Tomato | extracellular | 43.25 | 30.74 |
| Bra014467.1-P | Field mustard | cytosol | 36.31 | 30.71 |
| AT3G60840.1 | Thale cress | cytosol | 37.77 | 30.58 |
| CDY62713 | Canola | cytosol | 37.77 | 30.26 |
| KRH09228 | Soybean | cytosol | 29.38 | 30.09 |
| CDX89081 | Canola | cytosol | 37.41 | 29.88 |
| TraesCS5A01G233900.1 | Wheat | nucleus | 31.57 | 29.52 |
| TraesCS4A01G074200.2 | Wheat | nucleus | 32.85 | 29.46 |
| Solyc01g091380.2.1 | Tomato | plastid | 38.69 | 28.49 |
| PGSC0003DMT400033224 | Potato | nucleus | 38.87 | 28.21 |
| KRH40591 | Soybean | nucleus | 34.85 | 27.25 |
| TraesCS4A01G263800.1 | Wheat | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 30.66 | 27.1 |
| TraesCS7A01G260100.2 | Wheat | nucleus | 28.47 | 26.44 |
Protein Annotations
| EnsemblPlants:TraesCS6A01G089500.2 | EnsemblPlantsGene:TraesCS6A01G089500 | Gene3D:1.20.58.1520 | GO:GO:0000226 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0008017 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016043 | InterPro:MAP65_Ase1_PRC1 |
| ncoils:Coil | PANTHER:PTHR19321 | PANTHER:PTHR19321:SF13 | PFAM:PF03999 | SEG:seg | MapMan:35.1 |
Description
No Description!
Coordinates
chr6A:+:57756599..57760955
Molecular Weight (calculated)
61803.0 Da
IEP (calculated)
4.803
GRAVY (calculated)
-0.759
Length
548 amino acids
Sequence
(BLAST)
(BLAST)
001: MEPRRELLLR ELRDAWDEVG EAEEDRREAL RALEDDCLAV YRAKVAQVRQ QGARLRAEIA AALAELAALR AAVGDDPRSA AQTSAGSLRE ELRAIAPELE
101: EVRQRRDEMC RQIAEVTELI DRLRQEMRPG ERPPPPRVDA DPDDLTMNSL QELRAHLRHL QSEKDNRIKK MAELTSSLHA SSSVLGMDPQ EITTIVQEAG
201: AGDISDGAIA RLESEAERLR EAKRGRMQRL QDLVVAMLEL WSLMDTPPEE QSRFQGVACN VAASEDEITE PDALSAGAIG EVEAEVARLE GLKGRRMKDL
301: LARKRGELRE IRLRARIVSA QEEEDGGSDE VVSDDGCADA AERSLVLERL DARISEARDE EFSRKEVLER MERWQAALEE ESWLEEYNRN ENRYNVGKGM
401: HLMLKRAEKA RTLVNKMPAM AEALTAKVVV WEEDRGTKFL YDGEGLLDML EEYDNTRKEK EQEKKRQRDQ RRLQGQSTVE SPVARALQKN LKNVTRTLSM
501: GGSKKMIVSA SSSSSLSSPR PITPSYLKSS SSPRRSDDGQ MVSQDSFE
101: EVRQRRDEMC RQIAEVTELI DRLRQEMRPG ERPPPPRVDA DPDDLTMNSL QELRAHLRHL QSEKDNRIKK MAELTSSLHA SSSVLGMDPQ EITTIVQEAG
201: AGDISDGAIA RLESEAERLR EAKRGRMQRL QDLVVAMLEL WSLMDTPPEE QSRFQGVACN VAASEDEITE PDALSAGAIG EVEAEVARLE GLKGRRMKDL
301: LARKRGELRE IRLRARIVSA QEEEDGGSDE VVSDDGCADA AERSLVLERL DARISEARDE EFSRKEVLER MERWQAALEE ESWLEEYNRN ENRYNVGKGM
401: HLMLKRAEKA RTLVNKMPAM AEALTAKVVV WEEDRGTKFL YDGEGLLDML EEYDNTRKEK EQEKKRQRDQ RRLQGQSTVE SPVARALQKN LKNVTRTLSM
501: GGSKKMIVSA SSSSSLSSPR PITPSYLKSS SSPRRSDDGQ MVSQDSFE
001: MIRNSTEQFS RIETTCGLLL RQLQEIWNEM GETEDEKDAS LADIEKECLS VYKRKVEEAS RGKANLLKEI AVGRAEIAAI GSSMGGQEIH SNSRLGENLK
101: EELENVNVQL DGLRKRKAER MIRFNEVIDQ LLKLSLQLGN PTDYLKKFAA EETDLSLQRL EELRSQLGEL QNEKSKRLEE VECLLKTLNS LCSVLGEDFK
201: GMIRGIHSSL VDSNTRDVSR STLDKLDMMI VNLREAKLQR MQKVQDLAVS LLELWNLLDT PAEEQKIFHN VTCSIALTES EITEANILSV ASIKRVEDEV
301: IRLSKIKITK IKEVILRKRL ELEEISRKMH MATEVLKSEN FSVEAIESGV KDPEQLLEQI DSEIAKVKEE ASSRKEILEK VEKWMSACEE ESWLEEYNRD
401: DNRYNAGRGA HLTLKRAEKA RLLVNKLPGM VEALTAKVTA WENERGNEFL YDGVRVLSML GQYKTVWEEK EHEKQRQRDM KKLHGQLITE QEALYGSKPS
501: PNKSGKKPLR TPVNAAMNRK LSLGGAMLHQ SLKHEKATLN SKRTKYYDQN ATSRRDSALP TLSGRRNSEL PGRIRSKNVP VAGKAARSPM LRKPLSPVTS
601: NILNSPEDHH KDAYTTKERI LTPKTNEEKK RAVPTTPAAS VAMTEATTPF TPAVEKRMDE EDVIVEYSFE EVRAGFC
101: EELENVNVQL DGLRKRKAER MIRFNEVIDQ LLKLSLQLGN PTDYLKKFAA EETDLSLQRL EELRSQLGEL QNEKSKRLEE VECLLKTLNS LCSVLGEDFK
201: GMIRGIHSSL VDSNTRDVSR STLDKLDMMI VNLREAKLQR MQKVQDLAVS LLELWNLLDT PAEEQKIFHN VTCSIALTES EITEANILSV ASIKRVEDEV
301: IRLSKIKITK IKEVILRKRL ELEEISRKMH MATEVLKSEN FSVEAIESGV KDPEQLLEQI DSEIAKVKEE ASSRKEILEK VEKWMSACEE ESWLEEYNRD
401: DNRYNAGRGA HLTLKRAEKA RLLVNKLPGM VEALTAKVTA WENERGNEFL YDGVRVLSML GQYKTVWEEK EHEKQRQRDM KKLHGQLITE QEALYGSKPS
501: PNKSGKKPLR TPVNAAMNRK LSLGGAMLHQ SLKHEKATLN SKRTKYYDQN ATSRRDSALP TLSGRRNSEL PGRIRSKNVP VAGKAARSPM LRKPLSPVTS
601: NILNSPEDHH KDAYTTKERI LTPKTNEEKK RAVPTTPAAS VAMTEATTPF TPAVEKRMDE EDVIVEYSFE EVRAGFC
Arabidopsis Description
MAP65-465-kDa microtubule-associated protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LZY0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.