CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG92454
KRG97470	nucleus
KRG97697	nucleus
KRH08024	nucleus
KRH09228
KRH31175	nucleus
KRH31421	nucleus
KRH34346
KRH35672	nucleus
KRH38719
KRH39504
KRH74448

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G51600.1	KRH39504	AT2G22640.1	25262777
AT5G51600.1	KRH74448	AT2G22640.1	25262777
AT5G51600.1	KRH35672	AT3G19590.1	25262777
AT5G51600.1	KRH35672	AT3G19590.1	25262777
AT5G51600.1	KRG97470	AT3G25980.1	25262777
AT5G51600.1	KRH08024	AT3G25980.1	25262777
AT5G51600.1	KRH31421	AT3G25980.1	25262777
AT5G51600.1	KRG97470	AT3G25980.1	25262777
AT5G51600.1	KRH08024	AT3G25980.1	25262777
AT5G51600.1	KRH31421	AT3G25980.1	25262777
AT5G51600.1	KRG97697	AT5G05510.1	25262777
AT5G51600.1	KRH31175	AT5G05510.1	25262777
AT5G51600.1	KRG97697	AT5G05510.1	25262777
AT5G51600.1	KRH31175	AT5G05510.1	25262777
AT5G51600.1	KRG92454	AT5G51600.1	25262777
AT5G51600.1	KRH09228	AT5G51600.1	25262777
AT5G51600.1	KRH34346	AT5G51600.1	25262777
AT5G51600.1	KRH38719	AT5G51600.1	25262777

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG92454	Soybean	nucleus	73.45	65.06
KRH09228	Soybean	cytosol	53.42	64.3
KRH34346	Soybean	cytosol	74.22	64.16
VIT_16s0022g01820.t01	Wine grape	nucleus	67.24	59.32
Zm00001d030420_P001	Maize	cytosol	20.5	57.64
GSMUA_Achr5P11340_001	Banana	cytosol	57.3	55.32
CDX86911	Canola	nucleus	46.12	55.1
Solyc03g007130.2.1	Tomato	nucleus	63.35	55.06
PGSC0003DMT400079660	Potato	cytosol	63.66	55.03
AT5G51600.1	Thale cress	cytosol	60.09	54.74
Bra010069.1-P	Field mustard	nucleus	45.81	54.73
CDY00270	Canola	nucleus	45.81	54.73
GSMUA_Achr1P02510_001	Banana	cytosol	57.3	54.67
Bra023930.1-P	Field mustard	cytosol	60.09	54.58
GSMUA_Achr5P10040_001	Banana	nucleus	53.73	54.57
AT5G62250.1	Thale cress	nucleus	46.43	54.46
Bra028266.1-P	Field mustard	cytosol	59.78	54.46
Bra035900.1-P	Field mustard	nucleus	45.65	54.34
CDX87240	Canola	nucleus	45.34	53.97
CDY16786	Canola	nucleus	45.5	53.96
PGSC0003DMT400070431	Potato	nucleus	58.07	53.89
Solyc11g072280.1.1	Tomato	extracellular	62.42	52.14
TraesCS3B01G297900.1	Wheat	cytosol	54.66	51.01
TraesCS3A01G264600.1	Wheat	cytosol	54.5	50.94
TraesCS3D01G264700.2	Wheat	cytosol	54.5	50.87
Zm00001d011615_P001	Maize	cytosol, nucleus, plastid	54.97	50.21
OQU87349	Sorghum	golgi, vacuole	55.28	49.79
TraesCS1B01G400200.1	Wheat	cytosol	51.24	48.46
TraesCS1A01G378900.1	Wheat	cytosol	50.62	48.15
TraesCS1D01G386100.1	Wheat	cytosol	50.78	48.02
Zm00001d043831_P001	Maize	cytosol, mitochondrion	54.5	47.82
Os05t0552900-01	Rice	cytosol	53.57	47.2
HORVU3Hr1G063620.1	Barley	plastid	53.42	46.11
HORVU1Hr1G083810.7	Barley	cytosol	48.91	46.05
KRG98677	Soybean	cytosol	30.9	45.33
KRH09582	Soybean	cytosol, mitochondrion, nucleus	10.4	44.37
KRH73815	Soybean	cytosol	39.6	43.81
Os02t0126300-01	Rice	plasma membrane	37.42	43.11
KRG89099	Soybean	cytosol	40.22	43.09
KRH14311	Soybean	endoplasmic reticulum	39.44	43.05
KRH40910	Soybean	cytosol, mitochondrion, nucleus	39.91	42.76
KRH46955	Soybean	cytosol	18.48	42.05
Zm00001d006888_P001	Maize	cytosol	17.39	41.95
KRH40591	Soybean	nucleus	45.65	41.94
KRH01846	Soybean	extracellular	22.52	41.91
KRH33387	Soybean	cytosol	7.45	41.74
KRG97427	Soybean	cytosol	35.56	41.56
KRH46253	Soybean	nucleus	20.19	41.27
TraesCSU01G016800.1	Wheat	nucleus	34.94	40.91
TraesCS6B01G111900.1	Wheat	nucleus	34.47	40.44
KRH14315	Soybean	cytosol, endoplasmic reticulum	37.42	40.44
EES06214	Sorghum	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	36.65	40.34
TraesCS6A01G089500.2	Wheat	nucleus	34.16	40.15
Zm00001d053956_P001	Maize	nucleus	36.8	39.77
KRH31473	Soybean	cytosol	36.02	39.06
KRH20613	Soybean	cytosol	34.01	38.62
KRG99429	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, peroxisome, plasma membrane, vacuole	8.07	38.52
Zm00001d015096_P002	Maize	nucleus	36.49	38.46
Zm00001d046884_P001	Maize	plastid	22.2	29.79

Protein Annotations

Gene3D:1.20.58.1520	MapMan:13.4.3.5	EMBL:ACUP02005867	ncoils:Coil	EnsemblPlantsGene:GLYMA_09G153500	GO:GO:0000226
GO:GO:0000910	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0007049	GO:GO:0008017
GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	UniProt:K7LE39	EnsemblPlants:KRH38719	ProteinID:KRH38719
ProteinID:KRH38719.1	ProteinID:KRH38720.1	InterPro:MAP65_Ase1_PRC1	PFAM:PF03999	PANTHER:PTHR19321	PANTHER:PTHR19321:SF7
UniParc:UPI000294C2E6	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr9:+:37633735..37640743

Molecular Weight (calculated)

73160.3 Da

IEP (calculated)

7.479

GRAVY (calculated)

-0.624

Length

644 amino acids

Sequence
(BLAST)

001: MSKPNHLLQT KTTCGSLLDE LQIIWNEVGE SETEKDRMVF EIEEECLEVY RRKVDKANRS RAQLRQEIAD SEAELASICL AMGERPVHVR QFDQKAVSLK
101: QELARVRQEL EEMQKRKSGR RNQFIEVQEQ IQSISNEISP SITAIVDETD LSLRKLEELH RQLLALQKEK SERLKKVQDH LYTLNSLCSV LGLDFKQTVS
201: GVHPSLGNSE GPKSVNNDTI NQLAIGIQGL RKVKLKRMQR LQDLASTMLE LWNLMDTPIE EQQVFQNVTC NIAASEHEVT EPNSLSENFI YNVEAEVSRL
301: EELKSSKIKE LVLKKRVELE EICQKTHLIP EIGSAMKYPV EAIESGSVDP ACVLEQIELR IARVKEEAFF RKEILEKVEK WLSACDEESW LEEYNRDENR
401: YNAGRGSHIT LKRAEKARAL VNKLPAMVDA LTSKTVAWEK DKGIEFTYDG TCLLSMLENY SLSRQEKEQE RRRQRELKKL QGQIIVEKEV LYGSKPSPSK
501: AQSVKKAPRL STRSTSSKRI SLGCQTPKSD SKATQSFSTG KTDKVHQNEQ LNNLDDDVSC LSSARRGLDI AGVPLRKYST GAGSVLDMVS PLTRQPFSPI
601: SLTLSSKANV ANAANDTQNE KLQKTLVVRQ FSIYHYLKDN HSGQ

Best Arabidopsis Sequence Match ( AT5G51600.1 )
(BLAST)

001: MASVQKDPIL QVETTCGSLL FELQIIWDEV GETETDRDQM LLELERECLE VYRRKVDQAN RCRAQLRQAI ADAEAQLAAI CSAMGERPVH IRQSDQSVGS
101: LKQELGRILP ELEEMQKRKV ERRNQFIVVM EQIDSITNDI KGQGELVHSE PLIDETNLSM RKLEELHCQL QVLQKEKIDR VETIRKHLCT LYSHCSVLGM
201: DFNEVVGQVN PTLSDPEGPR SLSDHTIEKL GAAVQKLMEV KIQRMQRLQD LATTMLELWN LMDTPIEEQQ EYQHITCNIA ASEHEITEAN SLSEDFIKYV
301: EAEVVRLDEV KASKMKELVL KKRSELEEIC RKTHLLPVSD SAIDQTIVAI ESGIVDATMV LEHLEQHISK IKEEALSRKE ILERVEKWLS ACDEESWLEE
401: YNRDDNRYNA GRGAHLTLKR AEKARNLVTK LPGMVEALAS KTIVWEQENG IEFLYDGIRL LSMLEEYNIL RQEREEEHRR QRDQKKLQGQ LIAEQEALYG
501: SKPSPSKPLG GKKAPRMSTG GASNRRLSLG AAMHQTPKPN KKADHRHNDG ALSNGRRGLD IAGLPSRKQS MNPSEMLQSP LVRKPFSPIS TTVVASKANI
601: ATTTTQQLPK NNAVNEISSF ATPIKNNNIL RNLEEEKMMT MMMQTPKNVA AMIPIPSTPA TVSVPMHTAP TPFTNNARLM SEKPEVVEYS FEERRLAFML
701: QSECRLV

Arabidopsis Description

MAP65-365-kDa microtubule-associated protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FHM4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.