CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: golgi, vacuole

Predictor Summary:

nucleus 1
extracellular 3
endoplasmic reticulum 3
vacuole 4
plasma membrane 3
golgi 4
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, vacuole
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	golgi
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	vacuole

PPI

Inferred distinct locusB in Crop

locusB	locations
EER87819	nucleus
EES06214
EES07816
EES09179	nucleus
EES12410	nucleus
EES16550	nucleus
OQU87349

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G51600.1	EES07816	AT2G22640.1	25262777
AT5G51600.1	EER87819	AT3G19590.1	25262777
AT5G51600.1	EER87819	AT3G19590.1	25262777
AT5G51600.1	EES12410	AT3G25980.1	25262777
AT5G51600.1	EES12410	AT3G25980.1	25262777
AT5G51600.1	EES09179	AT5G05510.1	25262777
AT5G51600.1	EES16550	AT5G05510.1	25262777
AT5G51600.1	EES09179	AT5G05510.1	25262777
AT5G51600.1	EES16550	AT5G05510.1	25262777
AT5G51600.1	EES06214	AT5G51600.1	25262777
AT5G51600.1	OQU87349	AT5G51600.1	25262777

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d030420_P001	Maize	cytosol	30.35	94.76
Zm00001d011615_P001	Maize	cytosol, nucleus, plastid	91.05	92.34
TraesCS3A01G264600.1	Wheat	cytosol	78.74	81.71
TraesCS3D01G264700.2	Wheat	cytosol	78.74	81.59
TraesCS3B01G297900.1	Wheat	cytosol	78.6	81.45
HORVU3Hr1G063620.1	Barley	plastid	78.6	75.34
GSMUA_Achr1P02510_001	Banana	cytosol	63.22	66.96
GSMUA_Achr5P11340_001	Banana	cytosol	62.1	66.57
Zm00001d006888_P001	Maize	cytosol	22.94	61.42
VIT_16s0022g01820.t01	Wine grape	nucleus	61.26	60.0
KRG92454	Soybean	nucleus	58.18	57.22
Solyc03g007130.2.1	Tomato	nucleus	58.6	56.55
VIT_15s0048g00860.t01	Wine grape	cytosol, nucleus, plasma membrane	47.27	56.43
PGSC0003DMT400079660	Potato	cytosol	58.46	56.11
KRH34346	Soybean	cytosol	58.46	56.11
PGSC0003DMT400070431	Potato	nucleus	54.27	55.91
Bra023930.1-P	Field mustard	cytosol	54.97	55.43
KRH38719	Soybean	cytosol	49.79	55.28
AT5G51600.1	Thale cress	cytosol	54.55	55.16
Bra028266.1-P	Field mustard	cytosol	54.41	55.02
Solyc11g072280.1.1	Tomato	extracellular	56.64	52.53
Bra010069.1-P	Field mustard	nucleus	39.58	52.5
CDX86911	Canola	nucleus	39.58	52.5
CDY00270	Canola	nucleus	39.58	52.5
Bra035900.1-P	Field mustard	nucleus	39.3	51.94
CDY16786	Canola	nucleus	39.3	51.75
AT5G62250.1	Thale cress	nucleus	39.72	51.73
CDX87240	Canola	nucleus	39.02	51.57
EER88641	Sorghum	cytosol	39.16	48.28
EER89674	Sorghum	cytosol	38.46	46.45
Solyc01g091380.2.1	Tomato	plastid	46.85	45.03
Zm00001d046884_P001	Maize	plastid	30.07	44.79
EES06214	Sorghum	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	36.64	44.79
PGSC0003DMT400033224	Potato	nucleus	46.85	44.37
KRH40591	Soybean	nucleus	43.08	43.94
KRH09228	Soybean	cytosol	32.87	43.93
AT3G60840.1	Thale cress	cytosol	40.98	43.28
Bra014467.1-P	Field mustard	cytosol	38.88	42.9
CDX89081	Canola	cytosol	40.98	42.71
CDY62713	Canola	cytosol	40.84	42.69
EER98994	Sorghum	nucleus	34.41	41.28
KXG21994	Sorghum	cytosol	33.01	41.26
EER92583	Sorghum	cytosol	34.41	40.26
EES15312	Sorghum	cytosol	31.75	38.41
EER90980	Sorghum	cytosol	30.35	34.28
EES11428	Sorghum	nucleus	11.47	28.47
OQU77968	Sorghum	cytosol	12.45	24.25

Protein Annotations

Gene3D:1.20.58.1520	MapMan:13.4.3.5	EntrezGene:8063074	UniProt:A0A1W0VYZ4	ncoils:Coil	GO:GO:0000226
GO:GO:0000910	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0007049	GO:GO:0008017
GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	InterPro:MAP65_Ase1_PRC1	EnsemblPlants:OQU87349	ProteinID:OQU87349
ProteinID:OQU87349.1	PFAM:PF03999	PANTHER:PTHR19321	PANTHER:PTHR19321:SF8	EnsemblPlantsGene:SORBI_3003G260700	SignalP:SignalP-noTM
UniParc:UPI0009DC83E4	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:+:59854745..59858961

Molecular Weight (calculated)

80301.5 Da

IEP (calculated)

6.241

GRAVY (calculated)

-0.475

Length

715 amino acids

Sequence
(BLAST)

001: MCVCVAAKLR LICGIASAGC CCGVPPLAMS SAVKDQLQQM STTCDSLLLE LNVIWDEVGE PDMARDRMLL ELEQECLDVY RRKVDQANRC RAQLRQAIAE
101: AEAELAGICS AMGEPPIHVR QSNKKLHGLR EELNAIVPYL EEMRKKKVER WDQFLDVIEQ IKKVASEIRP ADFVPFRIPV DQSDLSLRKL EELTKELQSL
201: QKEKSDRLKQ VMEHLNTLHS LCEVLGVDFK QTVYEVHPSL GETDGSKNLS NSTIESLASA VNRLRELKVQ RMQKLQDLAS SMLELWNLMD TPLEEQQMFQ
301: NVTCNIAASE HEITEPNTLS TDFLSYVESE VLRLEQLKAS KMKDLVLKKK TELEEHRRRA HLIGEEGYAA EFSDEAIEAG AVDPALVLEQ IEAHIATVKE
401: EAFSRKDILE KVERWLNACE EEAWLEDYNK DDNRYNAGRG AHLTLKRAEK ARILVNKIPG LVDVLTTKIV AWETERGKEF TYDGVRLLSM LEEYMIVRQE
501: KELEKKRQRD QKKIQDQLKA EQEALYGSKP SPSKPQSTKK APRHSMGGAN RRLSLGGPTT HAPKTDIMHS KTARAAKKAE DLGALSPSSR GLDIAGLPVK
601: KLCFNASTLR EAETPRKPFA QIMPGNNVSS IPARPISNDT EEENKTPKTF AGLNPKTPAT VTAPMQMAAT PAVANKVVAT PETLFQKAEL PALPADIEYS
701: FEERRLALYV ARQVA

Best Arabidopsis Sequence Match ( AT5G51600.1 )
(BLAST)

001: MASVQKDPIL QVETTCGSLL FELQIIWDEV GETETDRDQM LLELERECLE VYRRKVDQAN RCRAQLRQAI ADAEAQLAAI CSAMGERPVH IRQSDQSVGS
101: LKQELGRILP ELEEMQKRKV ERRNQFIVVM EQIDSITNDI KGQGELVHSE PLIDETNLSM RKLEELHCQL QVLQKEKIDR VETIRKHLCT LYSHCSVLGM
201: DFNEVVGQVN PTLSDPEGPR SLSDHTIEKL GAAVQKLMEV KIQRMQRLQD LATTMLELWN LMDTPIEEQQ EYQHITCNIA ASEHEITEAN SLSEDFIKYV
301: EAEVVRLDEV KASKMKELVL KKRSELEEIC RKTHLLPVSD SAIDQTIVAI ESGIVDATMV LEHLEQHISK IKEEALSRKE ILERVEKWLS ACDEESWLEE
401: YNRDDNRYNA GRGAHLTLKR AEKARNLVTK LPGMVEALAS KTIVWEQENG IEFLYDGIRL LSMLEEYNIL RQEREEEHRR QRDQKKLQGQ LIAEQEALYG
501: SKPSPSKPLG GKKAPRMSTG GASNRRLSLG AAMHQTPKPN KKADHRHNDG ALSNGRRGLD IAGLPSRKQS MNPSEMLQSP LVRKPFSPIS TTVVASKANI
601: ATTTTQQLPK NNAVNEISSF ATPIKNNNIL RNLEEEKMMT MMMQTPKNVA AMIPIPSTPA TVSVPMHTAP TPFTNNARLM SEKPEVVEYS FEERRLAFML
701: QSECRLV

Arabidopsis Description

MAP65-365-kDa microtubule-associated protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FHM4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.