CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG92454
KRG97470	nucleus
KRG97697	nucleus
KRH08024	nucleus
KRH09228
KRH31175	nucleus
KRH31421	nucleus
KRH34346
KRH35672	nucleus
KRH38719
KRH39504
KRH74448

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G51600.1	KRH39504	AT2G22640.1	25262777
AT5G51600.1	KRH74448	AT2G22640.1	25262777
AT5G51600.1	KRH35672	AT3G19590.1	25262777
AT5G51600.1	KRH35672	AT3G19590.1	25262777
AT5G51600.1	KRG97470	AT3G25980.1	25262777
AT5G51600.1	KRH08024	AT3G25980.1	25262777
AT5G51600.1	KRH31421	AT3G25980.1	25262777
AT5G51600.1	KRG97470	AT3G25980.1	25262777
AT5G51600.1	KRH08024	AT3G25980.1	25262777
AT5G51600.1	KRH31421	AT3G25980.1	25262777
AT5G51600.1	KRG97697	AT5G05510.1	25262777
AT5G51600.1	KRH31175	AT5G05510.1	25262777
AT5G51600.1	KRG97697	AT5G05510.1	25262777
AT5G51600.1	KRH31175	AT5G05510.1	25262777
AT5G51600.1	KRG92454	AT5G51600.1	25262777
AT5G51600.1	KRH09228	AT5G51600.1	25262777
AT5G51600.1	KRH34346	AT5G51600.1	25262777
AT5G51600.1	KRH38719	AT5G51600.1	25262777

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG92454	Soybean	nucleus	92.21	94.5
KRH38719	Soybean	cytosol	64.16	74.22
VIT_16s0022g01820.t01	Wine grape	nucleus	68.86	70.27
GSMUA_Achr5P11340_001	Banana	cytosol	57.72	64.47
Solyc03g007130.2.1	Tomato	nucleus	63.89	64.24
GSMUA_Achr1P02510_001	Banana	cytosol	58.12	64.15
PGSC0003DMT400079660	Potato	cytosol	64.03	64.03
AT5G51600.1	Thale cress	cytosol	60.27	63.51
Bra028266.1-P	Field mustard	cytosol	59.6	62.8
Bra023930.1-P	Field mustard	cytosol	59.73	62.76
PGSC0003DMT400070431	Potato	nucleus	57.45	61.67
GSMUA_Achr5P10040_001	Banana	nucleus	51.28	60.25
Solyc11g072280.1.1	Tomato	extracellular	61.61	59.53
Zm00001d030420_P001	Maize	cytosol	18.25	59.39
TraesCS3A01G264600.1	Wheat	cytosol	54.9	59.36
TraesCS3B01G297900.1	Wheat	cytosol	54.9	59.28
TraesCS3D01G264700.2	Wheat	cytosol	54.77	59.13
Zm00001d011615_P001	Maize	cytosol, nucleus, plastid	55.84	59.01
KRH09228	Soybean	cytosol	42.28	58.88
OQU87349	Sorghum	golgi, vacuole	56.11	58.46
CDY00270	Canola	nucleus	42.15	58.26
CDX86911	Canola	nucleus	42.01	58.07
Bra010069.1-P	Field mustard	nucleus	41.88	57.88
AT5G62250.1	Thale cress	nucleus	42.42	57.56
Bra035900.1-P	Field mustard	nucleus	41.21	56.75
CDX87240	Canola	nucleus	40.94	56.38
CDY16786	Canola	nucleus	41.07	56.35
TraesCS1B01G400200.1	Wheat	cytosol	51.14	55.95
Zm00001d043831_P001	Maize	cytosol, mitochondrion	55.03	55.86
TraesCS1A01G378900.1	Wheat	cytosol	50.6	55.69
TraesCS1D01G386100.1	Wheat	cytosol	50.87	55.65
Os05t0552900-01	Rice	cytosol	53.96	54.99
HORVU3Hr1G063620.1	Barley	plastid	54.9	54.83
HORVU1Hr1G083810.7	Barley	cytosol	49.4	53.8
KRH09582	Soybean	cytosol, mitochondrion, nucleus	9.93	49.01
KRH73815	Soybean	cytosol	38.12	48.8
KRH40591	Soybean	nucleus	45.5	48.36
Os02t0126300-01	Rice	plasma membrane	36.24	48.3
KRH14311	Soybean	endoplasmic reticulum	37.58	47.46
KRH33387	Soybean	cytosol	7.25	46.96
KRG98677	Soybean	cytosol	27.11	46.01
KRG89099	Soybean	cytosol	36.91	45.76
KRH40910	Soybean	cytosol, mitochondrion, nucleus	36.78	45.59
EES06214	Sorghum	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	35.44	45.13
KRH46253	Soybean	nucleus	19.06	45.08
KRH14315	Soybean	cytosol, endoplasmic reticulum	35.7	44.63
Zm00001d006888_P001	Maize	cytosol	15.97	44.57
KRG97427	Soybean	cytosol	32.89	44.46
TraesCSU01G016800.1	Wheat	nucleus	32.48	44.0
KRH01846	Soybean	extracellular	20.4	43.93
KRH46955	Soybean	cytosol	16.64	43.82
Zm00001d053956_P001	Maize	nucleus	34.9	43.62
TraesCS6B01G111900.1	Wheat	nucleus	32.08	43.53
TraesCS6A01G089500.2	Wheat	nucleus	31.95	43.43
KRH31473	Soybean	cytosol	33.83	42.42
KRH20613	Soybean	cytosol	32.08	42.15
Zm00001d015096_P002	Maize	nucleus	34.36	41.9
KRG99429	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, peroxisome, plasma membrane, vacuole	7.11	39.26
Zm00001d046884_P001	Maize	plastid	21.07	32.71

Protein Annotations

Gene3D:1.20.58.1520	EntrezGene:100777734	MapMan:13.4.3.5	UniProt:A0A0R0HUX4	EMBL:ACUP02006591	ncoils:Coil
EnsemblPlantsGene:GLYMA_10G178100	GO:GO:0000226	GO:GO:0000910	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0007049	GO:GO:0008017	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	EnsemblPlants:KRH34346
ProteinID:KRH34346	ProteinID:KRH34346.1	InterPro:MAP65_Ase1_PRC1	PFAM:PF03999	PANTHER:PTHR19321	PANTHER:PTHR19321:SF7
UniParc:UPI0001B63CE0	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr10:-:41135345..41140920

Molecular Weight (calculated)

83936.2 Da

IEP (calculated)

5.634

GRAVY (calculated)

-0.550

Length

745 amino acids

Sequence
(BLAST)

001: MQFVDPLHCS DTKSPKMSKP QNDPLLQSET TCGTLLYELQ IIWDEVGEAE SDRDRMLFEL EQECLEVYRR KVDLANRSRA QLRQAIADCE AELAAICSSM
101: GERPVHIRQA DQNAGSLKEE HARILPQLEE MQKRKIERRN QFIEVQEQIQ SISIEIYGPR EYIPAVEDET DLSLRKLEEL HRQLHALQIE KSSRLKQVQE
201: HLYTLNSLCL VLGFDFKQTI NGIHPSLLDS EGSKSVSNDT IQQLAVAIQE LREVKLQRMQ KLQDLATTML ELWNLMDTPI EEQQMFQNVT CNIAASEHEV
301: TEPNTLSVDF INLVEAEVAR LEALKSSKMK ELVLKKRTEL EEICRKTHLI PEIDNAVESA VDAIESGSVD PACILEQIEL QISQVKEEAF GRKEILEKVE
401: KWLAACDEES WLEEYNRDDN RYNAGRGAHL TLKRAEKARA LVNKIPAMVD GLTSKTIAWE KEKGIEFTYD GIRLLSMLEE YNILRQGKEQ ERRRQRDLKK
501: LQGQMIAEQE ALYGSKPSPS KPQSVKKGPR MSTGGAASRR VSLGGAMLQT PKPDSKATHS RATRKIDKAH QIEHLNYLDD GIAGLSAARR GLDIAGVPVK
601: KHSFGAGTQI IESPLLRQPF SPISSNSVSS KSNVANATDE QNKQSEKLQR TLSLNNVPFT TPSKTATTVV DEENRTPKAI PIPVPATPST VSVPMNMAMT
701: PVPSSIFKNI SLNSTTPTSV PHGNDMVQEA EYSFEEKRLS YYMLA

Best Arabidopsis Sequence Match ( AT5G51600.1 )
(BLAST)

001: MASVQKDPIL QVETTCGSLL FELQIIWDEV GETETDRDQM LLELERECLE VYRRKVDQAN RCRAQLRQAI ADAEAQLAAI CSAMGERPVH IRQSDQSVGS
101: LKQELGRILP ELEEMQKRKV ERRNQFIVVM EQIDSITNDI KGQGELVHSE PLIDETNLSM RKLEELHCQL QVLQKEKIDR VETIRKHLCT LYSHCSVLGM
201: DFNEVVGQVN PTLSDPEGPR SLSDHTIEKL GAAVQKLMEV KIQRMQRLQD LATTMLELWN LMDTPIEEQQ EYQHITCNIA ASEHEITEAN SLSEDFIKYV
301: EAEVVRLDEV KASKMKELVL KKRSELEEIC RKTHLLPVSD SAIDQTIVAI ESGIVDATMV LEHLEQHISK IKEEALSRKE ILERVEKWLS ACDEESWLEE
401: YNRDDNRYNA GRGAHLTLKR AEKARNLVTK LPGMVEALAS KTIVWEQENG IEFLYDGIRL LSMLEEYNIL RQEREEEHRR QRDQKKLQGQ LIAEQEALYG
501: SKPSPSKPLG GKKAPRMSTG GASNRRLSLG AAMHQTPKPN KKADHRHNDG ALSNGRRGLD IAGLPSRKQS MNPSEMLQSP LVRKPFSPIS TTVVASKANI
601: ATTTTQQLPK NNAVNEISSF ATPIKNNNIL RNLEEEKMMT MMMQTPKNVA AMIPIPSTPA TVSVPMHTAP TPFTNNARLM SEKPEVVEYS FEERRLAFML
701: QSECRLV

Arabidopsis Description

MAP65-365-kDa microtubule-associated protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FHM4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.