Factsheet for PGSC0003DMT400070431

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400043032
PGSC0003DMT400045025	nucleus
PGSC0003DMT400066160	nucleus
PGSC0003DMT400070431
PGSC0003DMT400079660

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G51600.1	PGSC0003DMT400043032	AT2G22640.1	25262777
AT5G51600.1	PGSC0003DMT400066160	AT3G19590.1	25262777
AT5G51600.1	PGSC0003DMT400066160	AT3G19590.1	25262777
AT5G51600.1	PGSC0003DMT400045025	AT3G25980.1	25262777
AT5G51600.1	PGSC0003DMT400045025	AT3G25980.1	25262777
AT5G51600.1	PGSC0003DMT400070431	AT5G51600.1	25262777
AT5G51600.1	PGSC0003DMT400079660	AT5G51600.1	25262777

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g072280.1.1	Tomato	extracellular	95.25	85.73
PGSC0003DMT400079660	Potato	cytosol	75.22	70.07
VIT_16s0022g01820.t01	Wine grape	nucleus	67.29	63.97
KRG92454	Soybean	nucleus	61.24	58.46
Zm00001d030420_P001	Maize	cytosol	19.16	58.08
KRH38719	Soybean	cytosol	53.89	58.07
GSMUA_Achr5P11340_001	Banana	cytosol	55.48	57.72
KRH34346	Soybean	cytosol	61.67	57.45
GSMUA_Achr1P02510_001	Banana	cytosol	55.33	56.89
AT5G51600.1	Thale cress	cytosol	57.35	56.29
Bra028266.1-P	Field mustard	cytosol	57.2	56.15
Bra023930.1-P	Field mustard	cytosol	57.35	56.14
TraesCS3B01G297900.1	Wheat	cytosol	54.61	54.93
TraesCS3A01G264600.1	Wheat	cytosol	54.47	54.86
TraesCS3D01G264700.2	Wheat	cytosol	54.47	54.78
Zm00001d011615_P001	Maize	cytosol, nucleus, plastid	55.48	54.61
OQU87349	Sorghum	golgi, vacuole	55.91	54.27
GSMUA_Achr5P10040_001	Banana	nucleus	49.57	54.26
CDY00270	Canola	nucleus	40.78	52.5
CDX86911	Canola	nucleus	40.78	52.5
TraesCS1A01G378900.1	Wheat	cytosol	51.15	52.44
Bra010069.1-P	Field mustard	nucleus	40.63	52.32
TraesCS1B01G400200.1	Wheat	cytosol	51.3	52.28
TraesCS1D01G386100.1	Wheat	cytosol	51.3	52.28
Zm00001d043831_P001	Maize	cytosol, mitochondrion	54.9	51.91
Bra035900.1-P	Field mustard	nucleus	40.35	51.76
AT5G62250.1	Thale cress	nucleus	40.92	51.73
CDX87240	Canola	nucleus	40.2	51.57
CDY16786	Canola	nucleus	40.35	51.57
HORVU1Hr1G083810.7	Barley	cytosol	50.29	51.02
HORVU3Hr1G063620.1	Barley	plastid	54.03	50.27
Os05t0552900-01	Rice	cytosol	52.02	49.38
KRH09228	Soybean	cytosol	37.32	48.41
Os02t0126300-01	Rice	plasma membrane	36.46	45.26
PGSC0003DMT400033224	Potato	nucleus	48.41	44.5
PGSC0003DMT400057428	Potato	cytosol	36.74	43.89
Zm00001d006888_P001	Maize	cytosol	16.43	42.7
PGSC0003DMT400033471	Potato	cytosol	35.3	42.68
TraesCS6A01G089500.2	Wheat	nucleus	33.43	42.34
EES06214	Sorghum	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	35.59	42.22
TraesCSU01G016800.1	Wheat	nucleus	33.29	42.0
TraesCS6B01G111900.1	Wheat	nucleus	32.71	41.35
Zm00001d053956_P001	Maize	nucleus	35.01	40.77
Zm00001d015096_P002	Maize	nucleus	34.44	39.12
PGSC0003DMT400058659	Potato	cytosol, plastid	33.72	38.94
PGSC0003DMT400075869	Potato	nucleus	33.29	38.56
PGSC0003DMT400074853	Potato	cytosol	32.56	37.98
PGSC0003DMT400008510	Potato	plastid	27.23	37.72
Zm00001d046884_P001	Maize	plastid	20.89	30.21

Protein Annotations

EnsemblPlants:PGSC0003DMT400070431	EnsemblPlantsGene:PGSC0003DMG400027381	Gene3D:1.20.58.1520	GO:GO:0000226	GO:GO:0000910	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0007049	GO:GO:0008017	GO:GO:0008150	GO:GO:0009987
GO:GO:0016043	InterPro:MAP65_Ase1_PRC1	ncoils:Coil	PANTHER:PTHR19321	PANTHER:PTHR19321:SF7	PFAM:PF03999
PGSC:PGSC0003DMG400027381	SEG:seg	UniParc:UPI0002967DF7	UniProt:M1CM58	MapMan:13.4.3.5	:

Description

Microtubule-associated protein [Source:PGSC_GENE;Acc:PGSC0003DMG400027381]

Coordinates

chr11:-:43851570..43854883

Molecular Weight (calculated)

78744.1 Da

IEP (calculated)

6.478

GRAVY (calculated)

-0.702

Length

694 amino acids

Sequence
(BLAST)

001: MLFEIERECL EVYRRKVDQA NKSRAQLRQA IADSEAELAA ICSAMGERPV HIKQSDKSQG GLKAELRAVL PELEEMRKRK SDRKNQFIEV MKQITKIKNE
101: IYRFTSASLV VDESDLSLRK LEELHTELHT LQKEKSERLK QVLNHLGTLN SLCSVLGMDF KHTVNEVDPS LGESEETKNI CDGTIQNLAA TIQRLQEVKL
201: QRMQRLQDLT TSMLELWNLM DTPIEEQQMF QNVTCKIAAK EHEITEPNML SMEFITYVEE EVDRLEELKA SKMKELVLKK KSELEEIYRK THMVGDSDGA
301: MNIAIEDIES AVNDADAVLE QIELRIAQVK EEAFSRKDIL DRVEKWIAAC EEECWLEEYN RDENRYNAGR GTHLTLKRAE KARALVNKLP AMMEALASKT
401: KAWENERGTQ FSYDGIPLLS MLEEYTILRE EKELERKKQR DQKKLQGQLM AEQESLYGSK PSPMKNQSAK KGPKLSCGGA PSNRRLSLGG TMQQTCKTEL
501: PHSTKATPNT RQAKKSERFH QLDQFNHPTD DGFGALSTGR RGGLGIDELP SKKQPISALN GSEVETAVMR KPFSPISSKG SSKSNATNIL GDMNRKHNET
601: MIKTPLSNHT TPVSTPVKSI STYEEENRTP AKAMPIPVPS TPSTVSVPMQ TTTPGPAVVT PYNSKLVENT HVVEEIEYSF EESRLEFYLQ RTHI

Best Arabidopsis Sequence Match ( AT5G51600.1 )
(BLAST)

001: MASVQKDPIL QVETTCGSLL FELQIIWDEV GETETDRDQM LLELERECLE VYRRKVDQAN RCRAQLRQAI ADAEAQLAAI CSAMGERPVH IRQSDQSVGS
101: LKQELGRILP ELEEMQKRKV ERRNQFIVVM EQIDSITNDI KGQGELVHSE PLIDETNLSM RKLEELHCQL QVLQKEKIDR VETIRKHLCT LYSHCSVLGM
201: DFNEVVGQVN PTLSDPEGPR SLSDHTIEKL GAAVQKLMEV KIQRMQRLQD LATTMLELWN LMDTPIEEQQ EYQHITCNIA ASEHEITEAN SLSEDFIKYV
301: EAEVVRLDEV KASKMKELVL KKRSELEEIC RKTHLLPVSD SAIDQTIVAI ESGIVDATMV LEHLEQHISK IKEEALSRKE ILERVEKWLS ACDEESWLEE
401: YNRDDNRYNA GRGAHLTLKR AEKARNLVTK LPGMVEALAS KTIVWEQENG IEFLYDGIRL LSMLEEYNIL RQEREEEHRR QRDQKKLQGQ LIAEQEALYG
501: SKPSPSKPLG GKKAPRMSTG GASNRRLSLG AAMHQTPKPN KKADHRHNDG ALSNGRRGLD IAGLPSRKQS MNPSEMLQSP LVRKPFSPIS TTVVASKANI
601: ATTTTQQLPK NNAVNEISSF ATPIKNNNIL RNLEEEKMMT MMMQTPKNVA AMIPIPSTPA TVSVPMHTAP TPFTNNARLM SEKPEVVEYS FEERRLAFML
701: QSECRLV

Arabidopsis Description

MAP65-365-kDa microtubule-associated protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FHM4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.