Factsheet for VIT_16s0022g01820.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_00s0211g00050.t01
VIT_01s0010g02430.t01	nucleus
VIT_03s0091g00710.t01	nucleus
VIT_13s0067g01530.t01	nucleus
VIT_16s0022g01820.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G51600.1	VIT_00s0211g00050.t01	AT2G22640.1	25262777
AT5G51600.1	VIT_03s0091g00710.t01	AT3G19590.1	25262777
AT5G51600.1	VIT_03s0091g00710.t01	AT3G19590.1	25262777
AT5G51600.1	VIT_01s0010g02430.t01	AT3G25980.1	25262777
AT5G51600.1	VIT_01s0010g02430.t01	AT3G25980.1	25262777
AT5G51600.1	VIT_13s0067g01530.t01	AT5G05510.1	25262777
AT5G51600.1	VIT_13s0067g01530.t01	AT5G05510.1	25262777
AT5G51600.1	VIT_16s0022g01820.t01	AT5G51600.1	25262777

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g007130.2.1	Tomato	nucleus	71.64	70.58
KRG92454	Soybean	nucleus	70.14	70.43
PGSC0003DMT400079660	Potato	cytosol	71.64	70.2
KRH34346	Soybean	cytosol	70.27	68.86
GSMUA_Achr5P11340_001	Banana	cytosol	62.05	67.92
PGSC0003DMT400070431	Potato	nucleus	63.97	67.29
KRH38719	Soybean	cytosol	59.32	67.24
GSMUA_Achr1P02510_001	Banana	cytosol	61.37	66.37
AT5G51600.1	Thale cress	cytosol	64.11	66.2
Bra023930.1-P	Field mustard	cytosol	63.97	65.87
Bra028266.1-P	Field mustard	cytosol	63.7	65.77
Solyc11g072280.1.1	Tomato	extracellular	67.95	64.33
GSMUA_Achr5P10040_001	Banana	nucleus	55.21	63.56
TraesCS3D01G264700.2	Wheat	cytosol	59.59	63.04
TraesCS3B01G297900.1	Wheat	cytosol	59.59	63.04
TraesCS3A01G264600.1	Wheat	cytosol	59.45	62.99
Zm00001d011615_P001	Maize	cytosol, nucleus, plastid	60.41	62.55
VIT_15s0048g00860.t01	Wine grape	cytosol, nucleus, plasma membrane	51.1	62.27
Zm00001d030420_P001	Maize	cytosol	19.32	61.57
OQU87349	Sorghum	golgi, vacuole	60.0	61.26
Zm00001d043831_P001	Maize	cytosol, mitochondrion	59.59	59.26
TraesCS1B01G400200.1	Wheat	cytosol	54.66	58.59
TraesCS1D01G386100.1	Wheat	cytosol	54.52	58.44
TraesCS1A01G378900.1	Wheat	cytosol	54.11	58.35
CDY00270	Canola	nucleus	42.88	58.07
Bra010069.1-P	Field mustard	nucleus	42.88	58.07
AT5G62250.1	Thale cress	nucleus	43.42	57.74
CDX86911	Canola	nucleus	42.6	57.7
CDX87240	Canola	nucleus	42.74	57.67
HORVU3Hr1G063620.1	Barley	plastid	58.9	57.64
Bra035900.1-P	Field mustard	nucleus	42.19	56.93
CDY16786	Canola	nucleus	42.19	56.72
HORVU1Hr1G083810.7	Barley	cytosol	52.74	56.29
Os05t0552900-01	Rice	cytosol	55.34	55.27
KRH09228	Soybean	cytosol	39.73	54.21
Os02t0126300-01	Rice	plasma membrane	36.85	48.12
VIT_19s0090g01230.t01	Wine grape	endoplasmic reticulum	36.85	48.04
Zm00001d006888_P001	Maize	cytosol	17.26	47.19
EES06214	Sorghum	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	37.4	46.67
TraesCSU01G016800.1	Wheat	nucleus	34.93	46.36
VIT_01s0010g03540.t01	Wine grape	cytosol	35.75	46.03
VIT_01s0011g06330.t01	Wine grape	nucleus	37.67	45.91
VIT_13s0084g00080.t01	Wine grape	cytosol, nucleus, plastid	35.34	45.91
TraesCS6A01G089500.2	Wheat	nucleus	34.38	45.8
TraesCS6B01G111900.1	Wheat	nucleus	34.11	45.36
Zm00001d053956_P001	Maize	nucleus	36.99	45.3
Zm00001d015096_P002	Maize	nucleus	36.44	43.54
Zm00001d046884_P001	Maize	plastid	22.88	34.79

Protein Annotations

Gene3D:1.20.58.1520	EntrezGene:100244670	wikigene:100244670	MapMan:13.4.3.5	ProteinID:CBI24513	ProteinID:CBI24513.3
ncoils:Coil	UniProt:D7T1Y3	EMBL:FN595506	GO:GO:0000226	GO:GO:0000910	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0007049	GO:GO:0008017	GO:GO:0008150	GO:GO:0009987
GO:GO:0016043	EntrezGene:LOC100244670	wikigene:LOC100244670	InterPro:MAP65_Ase1_PRC1	PFAM:PF03999	PANTHER:PTHR19321
PANTHER:PTHR19321:SF7	TIGR:TC64212	UniParc:UPI00015CBAF9	ArrayExpress:VIT_16s0022g01820	EnsemblPlantsGene:VIT_16s0022g01820	EnsemblPlants:VIT_16s0022g01820.t01
unigene:Vvi.17553	RefSeq:XP_002267584	RefSeq:XP_002267584.1	RefSeq:XP_010662377.1	SEG:seg	:

Description

No Description!

Coordinates

chr16:-:14017328..14022969

Molecular Weight (calculated)

82325.0 Da

IEP (calculated)

5.479

GRAVY (calculated)

-0.614

Length

730 amino acids

Sequence
(BLAST)

001: MSNVQSDPLL QVETTCGSLL YELQIIWDEV GESDTDRDKM LLELERECLE VYRRKVDQAN RCRAQLRQAI ADSEAELAAI CSAMGERPVH IRQSDQNAGS
101: LKEELKAIIP QLEEMHKRKS ERRNQFFEVV EEIEKIKSEI YSSTEYIASK TVVDDTDLSL RKLEELHKQL QALQKEKSDR LKQVLDHLST LNSLCLVLGM
201: DFQQTVNEVH PSLGDSDGRK NISNATIEQL AAAIKTLRGV KIQRMQRLQD LASSMLELWN LMDTPIEEQQ LFQNVTCNIA ASEHEINEPN TLSVDFINYV
301: EAEVSRLEEL KASKMKELVL KKRSELEEIC RKTHMIPEAD SALDYVIEAM ESGAVDASCV LEQIELQVAK VKEEAFSRKE ILEKVDKWLA ACEEESWLEE
401: YNRDDNRYNA GRGAHLTLKR AEKARSLVNK LPAMVDALAS KTVAWEKERG VEFTYDGIRL LSMLEEYTFL RQEKEEERRR QRDQKKLQGQ LIAEQEALFG
501: SKPSPSKPQS VKKASRVSTG STGSRRLSVG GAMIQTPKPD PIHSTKATPR PGKKSDRYQI DQVRHCQDDG FTALSAGTRG LDIAGLPIKK QSFNPREIDS
601: PMMRKPFSPI SSTASSEANT MLEDLNRPQP KILHKTVSSN NIPYTTPSKS QLPPPSATDE ENRTPKTMPI PVPSTPSTVS VPMLTAMTPA PPPAPVPYNA
701: NPVEETEYSF EERRAGFVLP QAHLKTAIQV

Best Arabidopsis Sequence Match ( AT5G51600.1 )
(BLAST)

001: MASVQKDPIL QVETTCGSLL FELQIIWDEV GETETDRDQM LLELERECLE VYRRKVDQAN RCRAQLRQAI ADAEAQLAAI CSAMGERPVH IRQSDQSVGS
101: LKQELGRILP ELEEMQKRKV ERRNQFIVVM EQIDSITNDI KGQGELVHSE PLIDETNLSM RKLEELHCQL QVLQKEKIDR VETIRKHLCT LYSHCSVLGM
201: DFNEVVGQVN PTLSDPEGPR SLSDHTIEKL GAAVQKLMEV KIQRMQRLQD LATTMLELWN LMDTPIEEQQ EYQHITCNIA ASEHEITEAN SLSEDFIKYV
301: EAEVVRLDEV KASKMKELVL KKRSELEEIC RKTHLLPVSD SAIDQTIVAI ESGIVDATMV LEHLEQHISK IKEEALSRKE ILERVEKWLS ACDEESWLEE
401: YNRDDNRYNA GRGAHLTLKR AEKARNLVTK LPGMVEALAS KTIVWEQENG IEFLYDGIRL LSMLEEYNIL RQEREEEHRR QRDQKKLQGQ LIAEQEALYG
501: SKPSPSKPLG GKKAPRMSTG GASNRRLSLG AAMHQTPKPN KKADHRHNDG ALSNGRRGLD IAGLPSRKQS MNPSEMLQSP LVRKPFSPIS TTVVASKANI
601: ATTTTQQLPK NNAVNEISSF ATPIKNNNIL RNLEEEKMMT MMMQTPKNVA AMIPIPSTPA TVSVPMHTAP TPFTNNARLM SEKPEVVEYS FEERRLAFML
701: QSECRLV

Arabidopsis Description

MAP65-365-kDa microtubule-associated protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FHM4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.