CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY16786	Canola	nucleus	95.19	94.84
CDY00270	Canola	nucleus	87.99	88.31
CDX86911	Canola	nucleus	87.43	87.76
AT5G62250.1	Thale cress	nucleus	85.77	84.52
Zm00001d030420_P001	Maize	cytosol	22.37	52.84
KRH38719	Soybean	cytosol	53.97	45.34
GSMUA_Achr5P11340_001	Banana	cytosol	54.34	44.08
GSMUA_Achr1P02510_001	Banana	cytosol	53.97	43.26
GSMUA_Achr5P10040_001	Banana	nucleus	50.65	43.22
VIT_16s0022g01820.t01	Wine grape	nucleus	57.67	42.74
KRG92454	Soybean	nucleus	56.01	41.68
TraesCS3B01G297900.1	Wheat	cytosol	52.5	41.16
TraesCS3D01G264700.2	Wheat	cytosol	52.31	41.01
KRH34346	Soybean	cytosol	56.38	40.94
Solyc03g007130.2.1	Tomato	nucleus	56.01	40.89
PGSC0003DMT400079660	Potato	cytosol	56.19	40.81
TraesCS3A01G264600.1	Wheat	cytosol	51.94	40.78
PGSC0003DMT400070431	Potato	nucleus	51.57	40.2
KRH09228	Soybean	cytosol	39.74	40.19
Os02t0126300-01	Rice	plasma membrane	40.85	39.53
OQU87349	Sorghum	golgi, vacuole	51.57	39.02
Zm00001d011615_P001	Maize	cytosol, nucleus, plastid	50.83	39.01
Solyc11g072280.1.1	Tomato	extracellular	54.53	38.26
CDY14300	Canola	nucleus	40.85	37.97
TraesCS1A01G378900.1	Wheat	cytosol	47.5	37.96
CDY19902	Canola	cytosol	41.04	37.95
TraesCS1D01G386100.1	Wheat	cytosol	47.69	37.89
TraesCS1B01G400200.1	Wheat	cytosol	47.69	37.89
CDY17313	Canola	cytosol	40.85	37.78
Zm00001d043831_P001	Maize	cytosol, mitochondrion	50.83	37.47
CDX89305	Canola	cytosol	39.37	37.43
HORVU3Hr1G063620.1	Barley	plastid	51.57	37.4
HORVU1Hr1G083810.7	Barley	cytosol	46.95	37.13
Zm00001d006888_P001	Maize	cytosol	18.3	37.08
Os05t0552900-01	Rice	cytosol	49.91	36.94
TraesCS6A01G089500.2	Wheat	nucleus	37.34	36.86
CDY06596	Canola	cytosol	39.93	36.67
TraesCS6B01G111900.1	Wheat	nucleus	37.15	36.61
TraesCSU01G016800.1	Wheat	nucleus	37.15	36.55
CDY20777	Canola	cytosol	39.74	36.5
EES06214	Sorghum	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	38.82	35.9
Zm00001d053956_P001	Maize	nucleus	39.37	35.74
CDY36737	Canola	nucleus	40.67	34.92
CDY33748	Canola	cytosol	38.26	34.67
CDX81663	Canola	cytosol	38.08	34.45
CDY17624	Canola	nucleus	38.45	34.21
CDY12006	Canola	cytosol	40.67	34.16
Zm00001d015096_P002	Maize	nucleus	37.89	33.55
CDX89081	Canola	cytosol	42.51	33.53
CDY03090	Canola	nucleus	38.26	33.33
CDY62713	Canola	cytosol	41.96	33.19
CDY27637	Canola	cytosol	34.94	33.16
CDY18372	Canola	nucleus	36.04	33.05
CDX93308	Canola	nucleus	35.67	32.77
CDX84899	Canola	extracellular, nucleus, plastid	34.75	32.75
CDX94287	Canola	nucleus	39.37	32.18
CDY15798	Canola	endoplasmic reticulum, golgi	23.29	29.86
CDX97365	Canola	nucleus	41.04	27.41
Zm00001d046884_P001	Maize	plastid	23.48	26.46
CDY09401	Canola	endoplasmic reticulum, golgi, plasma membrane	20.89	19.86

Protein Annotations

EnsemblPlants:CDX87240	EnsemblPlantsGene:GSBRNA2T00146178001	Gene3D:1.20.58.1520	GO:A0A078DDE4	GO:GO:0000226	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0008017	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043
InterPro:MAP65_Ase1_PRC1	ncoils:Coil	PANTHER:PTHR19321	PANTHER:PTHR19321:SF7	PFAM:PF03999	ProteinID:CDX87240
ProteinID:CDX87240.1	SEG:seg	UniParc:UPI0004EEA742	MapMan:35.1	:	:

Description

BnaC09g05550D

Coordinates

chrLK031849:+:1361181..1363505

Molecular Weight (calculated)

62652.2 Da

IEP (calculated)

5.124

GRAVY (calculated)

-0.794

Length

541 amino acids

Sequence
(BLAST)

001: MSKTQIESFS ASLLQELEII WDEVGETKTE REKILNEIED ECRNIYIGKI EKVKEERSRL RQDIVDSEAR VIAICSVMEE PSGPGRQQQS DQCGRSLKEE
101: LGKILLKLED MEKRKSERKN QFIQVIEDIK CIRDEINGES DETCSSDFSV DESDLSLRKL EEVHRELYTL QEQKRNRMKQ IQDHLRTLES LCSVLGLNFR
201: ETVTKIHPSL VESEGSRSIS NTTLDKLASS VNQWHETKIQ RMQELQDLVI TMLEFWNLLD TPAEEQQKFM SFSCNIAATV SEITKPNSLS TDLLEEVKAE
301: VSRLEELKWS KMKELVLKKR SELEEICKRT HIVIEEQDIA VENVIKAIES GEVNPENILE HIEYRAGKVK EEALSRKEIL EKAEKWLNAC EEETWLEEYN
401: QDENRYNAGK GSHLILKRAE KARVLVNKLS AIVEALASKI TIWESEREAE FLFDGNRLLA MLEEYTELRE EKEQERRRRR DLKKLQGQVT PEQDKGTPTK
501: HQSAKKSLKV STNKRFGSSP QTPRSDSPHS AKSFASQSRH G

Best Arabidopsis Sequence Match ( AT5G62250.1 )
(BLAST)

001: MSKSQIESTW SSLLQELEII WKEVGETETE REKILIEIEE ECREVYNRKI EKVKEEKIRI KQEIADSEAR VIDICSVMEE PPILGRHHQS DQQSGNGRSL
101: KDELVKILQK LEEMEKRKSE RKIQFIQVID DIRCVREEIN GESDDETCSS DFSADESDLS LRKLEELHRE LYTLQEQKRN RVKQIQDNIR TLESLCSVLG
201: LNFRETVTKI HPSLVDTEGS RSISNETLDK LASSVQQWHE TKIQRMQELQ DLVTTMLEFW NLMDTPAEEQ QKFMDVSCNI AATVSEITKP NSLSIDLLEE
301: VKAELCRLEE LKWSKMKELV LKKRSELEEI CRRTHIVLEE EDIAVENVIK AIESGDVNPE NILEQIEYRA GKVKEEALSR KEILEKADKW LNACEEENWL
401: EEYNQDENRY NAGKGSHLIL KRAEKARALV NKLPAMVEAL ASKITIWESE KEYEFLFDGN RLLSMLEEYT ELREEKEQER RRKRDLKKHQ GQVTSEQDKG
501: SVTKPQSAKK GLKVSTNKRF VSSPHTPQTD SPHSAKSNQS FSTPLSRHG

Arabidopsis Description

MAP65-965-kDa microtubule-associated protein 9 [Source:UniProtKB/Swiss-Prot;Acc:Q4PSA3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.