CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	cytosol
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY36737	Canola	nucleus	93.79	95.87
Bra028986.1-P	Field mustard	cytosol	87.42	95.75
CDY19902	Canola	cytosol	84.63	93.16
CDY17313	Canola	cytosol	84.47	92.99
CDY06596	Canola	cytosol	81.21	88.79
CDY20777	Canola	cytosol	80.9	88.45
AT5G55230.2	Thale cress	cytosol	83.7	87.5
CDY14300	Canola	nucleus	72.98	80.76
CDX89305	Canola	cytosol	69.25	78.38
KRH73815	Soybean	cytosol	69.1	76.46
KRH14311	Soybean	endoplasmic reticulum	68.94	75.25
VIT_19s0090g01230.t01	Wine grape	endoplasmic reticulum	63.51	73.04
Solyc07g064970.2.1	Tomato	nucleus	64.13	71.08
PGSC0003DMT400057428	Potato	cytosol	64.13	71.08
KRH14315	Soybean	cytosol, endoplasmic reticulum	65.22	70.47
GSMUA_Achr3P13450_001	Banana	cytosol	64.13	70.12
PGSC0003DMT400033471	Potato	cytosol	62.42	70.03
GSMUA_Achr4P19380_001	Banana	cytosol	63.66	69.97
KRG98677	Soybean	cytosol	47.36	69.48
GSMUA_Achr7P06200_001	Banana	cytosol	63.35	69.39
Solyc12g014490.1.1	Tomato	cytosol	61.02	69.31
GSMUA_Achr4P03890_001	Banana	cytosol	62.73	68.94
CDX94287	Canola	nucleus	70.5	68.58
KRH46253	Soybean	nucleus	32.3	66.03
Os06t0308300-01	Rice	golgi	58.07	64.93
Os06t0611000-01	Rice	nucleus	58.07	64.37
TraesCS7D01G399400.1	Wheat	cytosol	57.92	64.31
TraesCS7B01G304900.2	Wheat	cytosol	57.61	63.97
TraesCS7A01G405500.1	Wheat	cytosol	57.3	63.62
HORVU7Hr1G094860.1	Barley	cytosol	57.3	63.62
EER89674	Sorghum	cytosol	58.23	63.34
TraesCS7D01G224800.1	Wheat	cytosol	56.99	63.06
EER88641	Sorghum	cytosol	56.68	62.93
TraesCS7A01G223100.1	Wheat	cytosol, nucleus, plastid	56.99	61.89
HORVU7Hr1G045770.7	Barley	endoplasmic reticulum	57.14	60.13
TraesCS7B01G190000.1	Wheat	endoplasmic reticulum, golgi	57.3	60.0
TraesCS6D01G263300.1	Wheat	cytosol	53.26	58.43
Zm00001d037413_P002	Maize	cytosol	56.83	58.0
TraesCS6A01G282800.1	Wheat	cytosol	52.8	57.92
HORVU6Hr1G070900.6	Barley	cytosol	52.95	57.8
CDX97365	Canola	nucleus	72.67	57.78
Os02t0720200-01	Rice	cytosol	52.64	57.56
TraesCS6B01G311200.1	Wheat	cytosol	52.48	57.19
Zm00001d045864_P004	Maize	mitochondrion	56.52	53.77
CDX81663	Canola	cytosol	41.46	44.65
CDY17624	Canola	nucleus	42.08	44.57
CDY33748	Canola	cytosol	40.84	44.05
CDY00270	Canola	nucleus	35.4	42.3
CDY03090	Canola	nucleus	40.68	42.19
CDX86911	Canola	nucleus	35.25	42.12
CDY18372	Canola	nucleus	38.04	41.53
CDX84899	Canola	extracellular, nucleus, plastid	36.96	41.46
CDX93308	Canola	nucleus	37.89	41.43
CDY27637	Canola	cytosol	36.49	41.23
CDY15798	Canola	endoplasmic reticulum, golgi	26.86	41.0
CDX87240	Canola	nucleus	34.16	40.67
CDY16786	Canola	nucleus	34.16	40.52
CDY62713	Canola	cytosol	36.65	34.5
CDX89081	Canola	cytosol	36.18	33.97
CDY09401	Canola	endoplasmic reticulum, golgi, plasma membrane	19.57	22.14

Protein Annotations

Gene3D:1.20.58.1520	MapMan:13.4.3.6	GO:A0A078FFG2	UniProt:A0A078FFG2	EnsemblPlants:CDY12006	ProteinID:CDY12006
ProteinID:CDY12006.1	ncoils:Coil	GO:GO:0000226	GO:GO:0000910	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0007049	GO:GO:0008017	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043
EnsemblPlantsGene:GSBRNA2T00060861001	InterPro:MAP65_Ase1_PRC1	PFAM:PF03999	PANTHER:PTHR19321	PANTHER:PTHR19321:SF15	UniParc:UPI0004EF4C2E
SEG:seg	:	:	:	:	:

Description

BnaC03g14320DBnaC03g14320D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FFG2]

Coordinates

chrLK032015:-:826797..831781

Molecular Weight (calculated)

72067.8 Da

IEP (calculated)

4.771

GRAVY (calculated)

-0.626

Length

644 amino acids

Sequence
(BLAST)

001: MRMDAVFNLL VKLSVEVPAG PAQSVGAIQF IDPASDLQQE EEECWKCQSR KPSDFVTMVA TDAESPHLGE ITCGTLLQKL QEIWDEVGES DEERDKLLLQ
101: IEQECLHVYK RKVEQAAKSR AELLQTLSDA NAEQSSLTTS LGDKSFVNDI PDKSSGTIKE QLAAIAPALE QLWQQKDERV REFSDVQSQI QKICGEIAGG
201: LSSEVPIVDE SDLSLKKLDD FHSQLQELQK EKSDRLQKVL EFVSSVHDLC AVLGLDFLNT VKEVHPSLDE ETSVQAKSIS NETLSRLAKT VLTLKDDKKQ
301: RLQKLQELAT QLIDLWNLMD TPDEKRDLFD YVTCNISASV DEVTTRGALA HDLIKQAEVE VNRLDQLKAS RMKEIAFKKQ TELEEIYARA HVETNPESAR
401: ERIMSLIDSG NVEPTELLAD MDSQIAKAKE EAFSRKDILD RVEKWMSACE EESWLEDYNR DQNRYSASRG AHLNLKRAEK ARVLVSKIPA MVDTLVAKTR
501: AWEEEHNMSF AYDGVPLLAM LDEYGMLRQE REDEKRRLRE QKKVQEQPHV EQDTAFSTRP SPARPVSAKK PVGARANNGG ANGTPNRRLS LNANQNGSRS
601: VAKEGGRRES LNRPAAPTNY VAISKEEAAS SPGTGAADQV PASP

Best Arabidopsis Sequence Match ( AT5G55230.1 )
(BLAST)

001: MAVTDTESPH LGEITCGTLL EKLQEIWDEV GESDDERDKL LLQIEQECLD VYKRKVEQAA KSRAELLQTL SDANAELSSL TMSLGDKSLV GIPDKSSGTI
101: KEQLAAIAPA LEQLWQQKEE RVREFSDVQS QIQKICGDIA GGLSNEVPIV DESDLSLKKL DDFQSQLQEL QKEKSDRLRK VLEFVSTVHD LCAVLGLDFL
201: STVTEVHPSL DEDTSVQSKS ISNETLSRLA KTVLTLKDDK KQRLQKLQEL ATQLIDLWNL MDTPDEEREL FDHVTCNISS SVDEVTVPGA LARDLIEQAE
301: VEVDRLDQLK ASRMKEIAFK KQSELEEIYA RAHVEVNPES ARERIMSLID SGNVEPTELL ADMDSQISKA KEEAFSRKDI LDRVEKWMSA CEEESWLEDY
401: NRDQNRYSAS RGAHLNLKRA EKARILVSKI PAMVDTLVAK TRAWEEEHSM SFAYDGVPLL AMLDEYGMLR QEREEEKRRL REQKKVQEQP HVEQESAFST
501: RPSPARPVSA KKTVGPRANN GGANGTHNRR LSLNANQNGS RSTAKEAGRR ETLNRPAAPT NYVAISKEEA ASSPVSGAAD HQVPASP

Arabidopsis Description

ATMAP65-1Microtubule-associated proteins 65-1 [Source:UniProtKB/TrEMBL;Acc:F4K3E4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.