Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
plastid:
22908117
nucleus: 28394025 |
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400057428 | Potato | cytosol | 99.14 | 99.14 |
| Solyc12g014490.1.1 | Tomato | cytosol | 80.38 | 82.36 |
| KRH73815 | Soybean | cytosol | 77.97 | 77.84 |
| VIT_19s0090g01230.t01 | Wine grape | endoplasmic reticulum | 74.35 | 77.14 |
| KRH14311 | Soybean | endoplasmic reticulum | 77.28 | 76.1 |
| GSMUA_Achr4P19380_001 | Banana | cytosol | 74.7 | 74.06 |
| GSMUA_Achr7P06200_001 | Banana | cytosol | 74.18 | 73.3 |
| GSMUA_Achr3P13450_001 | Banana | cytosol | 74.01 | 73.01 |
| GSMUA_Achr4P03890_001 | Banana | cytosol | 72.29 | 71.67 |
| KRH14315 | Soybean | cytosol, endoplasmic reticulum | 73.15 | 71.31 |
| KRG98677 | Soybean | cytosol | 53.7 | 71.07 |
| CDY17313 | Canola | cytosol | 70.91 | 70.43 |
| CDY19902 | Canola | cytosol | 70.91 | 70.43 |
| Bra002922.1-P | Field mustard | cytosol | 70.74 | 70.26 |
| Bra028986.1-P | Field mustard | cytosol | 70.91 | 70.07 |
| AT4G26760.1 | Thale cress | cytosol | 69.02 | 69.38 |
| Os06t0308300-01 | Rice | golgi | 68.67 | 69.27 |
| KRH46253 | Soybean | nucleus | 37.52 | 69.21 |
| Bra035564.1-P | Field mustard | cytosol | 69.54 | 68.82 |
| AT5G55230.2 | Thale cress | cytosol | 72.81 | 68.67 |
| CDY20777 | Canola | cytosol | 69.54 | 68.59 |
| CDY14300 | Canola | nucleus | 68.67 | 68.56 |
| Bra026405.1-P | Field mustard | cytosol | 67.13 | 68.54 |
| CDX89305 | Canola | cytosol | 67.13 | 68.54 |
| CDY06596 | Canola | cytosol | 69.36 | 68.42 |
| Bra010428.1-P | Field mustard | cytosol | 68.5 | 68.38 |
| EER89674 | Sorghum | cytosol | 67.99 | 66.72 |
| TraesCS7D01G224800.1 | Wheat | cytosol | 66.27 | 66.15 |
| TraesCS7D01G399400.1 | Wheat | cytosol | 65.92 | 66.03 |
| CDY36737 | Canola | nucleus | 71.43 | 65.87 |
| TraesCS7B01G304900.2 | Wheat | cytosol | 65.58 | 65.69 |
| TraesCS7A01G405500.1 | Wheat | cytosol | 65.4 | 65.52 |
| HORVU7Hr1G094860.1 | Barley | cytosol | 65.23 | 65.34 |
| Os06t0611000-01 | Rice | nucleus | 65.23 | 65.23 |
| TraesCS7A01G223100.1 | Wheat | cytosol, nucleus, plastid | 66.27 | 64.92 |
| CDY12006 | Canola | cytosol | 71.08 | 64.13 |
| EER88641 | Sorghum | cytosol | 63.68 | 63.79 |
| TraesCS7B01G190000.1 | Wheat | endoplasmic reticulum, golgi | 66.78 | 63.09 |
| HORVU7Hr1G045770.7 | Barley | endoplasmic reticulum | 66.44 | 63.07 |
| HORVU6Hr1G070900.6 | Barley | cytosol | 62.65 | 61.69 |
| TraesCS6D01G263300.1 | Wheat | cytosol | 62.13 | 61.5 |
| Zm00001d037413_P002 | Maize | cytosol | 66.78 | 61.49 |
| TraesCS6A01G282800.1 | Wheat | cytosol | 61.79 | 61.16 |
| TraesCS6B01G311200.1 | Wheat | cytosol | 61.96 | 60.91 |
| Os02t0720200-01 | Rice | cytosol | 61.45 | 60.61 |
| CDX94287 | Canola | nucleus | 66.44 | 58.31 |
| Zm00001d045864_P004 | Maize | mitochondrion | 65.92 | 56.57 |
| CDX97365 | Canola | nucleus | 68.33 | 49.01 |
| Solyc01g096680.2.1 | Tomato | nucleus | 46.64 | 47.63 |
| Solyc05g015320.2.1 | Tomato | extracellular | 48.71 | 47.56 |
| Solyc01g005080.2.1 | Tomato | cytosol | 42.86 | 44.54 |
| Solyc04g008290.2.1 | Tomato | nucleus | 45.44 | 44.0 |
| Solyc03g007130.2.1 | Tomato | nucleus | 49.57 | 38.87 |
| Solyc11g072280.1.1 | Tomato | extracellular | 48.54 | 36.58 |
| Solyc01g091380.2.1 | Tomato | plastid | 42.86 | 33.47 |
Protein Annotations
| EMBL:GQ261232 | EnsemblPlants:Solyc07g064970.2.1 | EnsemblPlantsGene:Solyc07g064970.2 | Gene3D:1.20.58.1520 | GO:GO:0000226 | GO:GO:0000910 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0007049 | GO:GO:0008017 | GO:GO:0008150 |
| GO:GO:0009987 | GO:GO:0016043 | InterPro:MAP65_Ase1_PRC1 | ncoils:Coil | PANTHER:PTHR19321 | PANTHER:PTHR19321:SF15 |
| PFAM:PF03999 | UniParc:UPI000243C62D | UniProt:G8Z254 | MapMan:13.4.3.6 | : | : |
Description
Hop-interacting protein THI016 [Source:UniProtKB/TrEMBL;Acc:G8Z254]
Coordinates
chr7:+:66917517..66921066
Molecular Weight (calculated)
65309.2 Da
IEP (calculated)
4.820
GRAVY (calculated)
-0.567
Length
581 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAVDDQTPP VLDETTCGTL LQKLQQIWDE VGETDDERDK MLLQIDQECL DVYKRKVDHA VKSRAHLLQA LADAKVELSR LLSALGEKTY VGIPEKTSGT
101: IKEQLAAIAP TLEKLWKQKD DRIKDFFDVQ SQIQKISSEI AGYSEQVESL TVDESDLSVK KLDEFHVQLQ ELQKEKSDRL HKVLDLVSTV HDLCAVLGMD
201: FFSTVTEVHP SLDDSTGVQS KSISNDTLSN LANTVLVLKE DKKQRLLKLQ ELATQLIDLW NLMDTPEEER SLFDHVTCNI SASVDEVAIP GALALDLIEQ
301: AEVEVERLDQ LKASKMKEIS FKRQAELEDI YARAHVEIDT EAAREKIMGL IDSGNVDPAE LLADMDNQIV IAKEEAHSRK EILEKVEKWM AACEEESWLE
401: DYNRDDNRYN ASRGAHLNLK RAEKARILVN KIPALVDSLV AKTRAWEQER DTTFTYDGVP LLAMLDEYMM LRHDREEEKR RLRDQKKFHE QMSKDPEVFG
501: STPSPARPLG SKKVTGPRAN GSANGPASRR LSLNSHQNGS RSTSKDGKKD ARLSAPVNYV AMTKDDAASH ISGTEPIPST P
101: IKEQLAAIAP TLEKLWKQKD DRIKDFFDVQ SQIQKISSEI AGYSEQVESL TVDESDLSVK KLDEFHVQLQ ELQKEKSDRL HKVLDLVSTV HDLCAVLGMD
201: FFSTVTEVHP SLDDSTGVQS KSISNDTLSN LANTVLVLKE DKKQRLLKLQ ELATQLIDLW NLMDTPEEER SLFDHVTCNI SASVDEVAIP GALALDLIEQ
301: AEVEVERLDQ LKASKMKEIS FKRQAELEDI YARAHVEIDT EAAREKIMGL IDSGNVDPAE LLADMDNQIV IAKEEAHSRK EILEKVEKWM AACEEESWLE
401: DYNRDDNRYN ASRGAHLNLK RAEKARILVN KIPALVDSLV AKTRAWEQER DTTFTYDGVP LLAMLDEYMM LRHDREEEKR RLRDQKKFHE QMSKDPEVFG
501: STPSPARPLG SKKVTGPRAN GSANGPASRR LSLNSHQNGS RSTSKDGKKD ARLSAPVNYV AMTKDDAASH ISGTEPIPST P
001: MAVTDTESPH LGEITCGTLL EKLQEIWDEV GESDDERDKL LLQIEQECLD VYKRKVEQAA KSRAELLQTL SDANAELSSL TMSLGDKSLV GIPDKSSGTI
101: KEQLAAIAPA LEQLWQQKEE RVREFSDVQS QIQKICGDIA GGLSNEVPIV DESDLSLKKL DDFQSQLQEL QKEKSDRLRK VLEFVSTVHD LCAVLGLDFL
201: STVTEVHPSL DEDTSVQSKS ISNETLSRLA KTVLTLKDDK KQRLQKLQEL ATQLIDLWNL MDTPDEEREL FDHVTCNISS SVDEVTVPGA LARDLIEQAE
301: VEVDRLDQLK ASRMKEIAFK KQSELEEIYA RAHVEVNPES ARERIMSLID SGNVEPTELL ADMDSQISKA KEEAFSRKDI LDRVEKWMSA CEEESWLEDY
401: NRDQNRYSAS RGAHLNLKRA EKARILVSKI PAMVDTLVAK TRAWEEEHSM SFAYDGVPLL AMLDEYGMLR QEREEEKRRL REQKKVQEQP HVEQESAFST
501: RPSPARPVSA KKTVGPRANN GGANGTHNRR LSLNANQNGS RSTAKEAGRR ETLNRPAAPT NYVAISKEEA ASSPVSGAAD HQVPASP
101: KEQLAAIAPA LEQLWQQKEE RVREFSDVQS QIQKICGDIA GGLSNEVPIV DESDLSLKKL DDFQSQLQEL QKEKSDRLRK VLEFVSTVHD LCAVLGLDFL
201: STVTEVHPSL DEDTSVQSKS ISNETLSRLA KTVLTLKDDK KQRLQKLQEL ATQLIDLWNL MDTPDEEREL FDHVTCNISS SVDEVTVPGA LARDLIEQAE
301: VEVDRLDQLK ASRMKEIAFK KQSELEEIYA RAHVEVNPES ARERIMSLID SGNVEPTELL ADMDSQISKA KEEAFSRKDI LDRVEKWMSA CEEESWLEDY
401: NRDQNRYSAS RGAHLNLKRA EKARILVSKI PAMVDTLVAK TRAWEEEHSM SFAYDGVPLL AMLDEYGMLR QEREEEKRRL REQKKVQEQP HVEQESAFST
501: RPSPARPVSA KKTVGPRANN GGANGTHNRR LSLNANQNGS RSTAKEAGRR ETLNRPAAPT NYVAISKEEA ASSPVSGAAD HQVPASP
Arabidopsis Description
ATMAP65-1Microtubule-associated proteins 65-1 [Source:UniProtKB/TrEMBL;Acc:F4K3E4]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.