Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 3
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
plastid:
22908117
nucleus: 28394025 |
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400075869 | Potato | nucleus | 98.5 | 98.66 |
| Solyc01g005080.2.1 | Tomato | cytosol | 72.33 | 77.64 |
| VIT_01s0011g06330.t01 | Wine grape | nucleus | 70.17 | 70.28 |
| KRG89099 | Soybean | cytosol | 67.5 | 67.39 |
| CDY17624 | Canola | nucleus | 67.5 | 66.61 |
| Bra024843.1-P | Field mustard | nucleus | 67.33 | 66.45 |
| KRH40910 | Soybean | cytosol, mitochondrion, nucleus | 66.5 | 66.39 |
| AT2G01910.1 | Thale cress | nucleus | 67.0 | 66.12 |
| AT1G14690.1 | Thale cress | cytosol | 63.33 | 63.02 |
| CDY03090 | Canola | nucleus | 65.0 | 62.8 |
| CDX81663 | Canola | cytosol | 62.5 | 62.71 |
| CDY33748 | Canola | cytosol | 62.33 | 62.65 |
| Bra026811.1-P | Field mustard | cytosol, nucleus, plastid | 62.0 | 62.52 |
| CDY15798 | Canola | endoplasmic reticulum, golgi | 43.83 | 62.32 |
| KRH09582 | Soybean | cytosol, mitochondrion, nucleus | 15.5 | 61.59 |
| KRH46955 | Soybean | cytosol | 28.83 | 61.13 |
| GSMUA_Achr6P23030_001 | Banana | cytosol | 56.17 | 59.96 |
| GSMUA_Achr10P... | Banana | nucleus | 59.0 | 58.61 |
| EER98994 | Sorghum | nucleus | 57.67 | 58.05 |
| TraesCS5A01G233900.1 | Wheat | nucleus | 56.0 | 57.34 |
| KRH01846 | Soybean | extracellular | 33.0 | 57.23 |
| TraesCS5D01G240800.1 | Wheat | nucleus | 56.17 | 57.22 |
| TraesCS5B01G232400.1 | Wheat | nucleus | 55.83 | 56.88 |
| TraesCS4D01G231800.3 | Wheat | nucleus | 57.17 | 56.14 |
| TraesCS4A01G074200.2 | Wheat | nucleus | 57.17 | 56.14 |
| Os09t0450300-01 | Rice | nucleus | 55.67 | 56.13 |
| Os03t0237600-04 | Rice | nucleus | 57.0 | 56.07 |
| TraesCS4B01G230500.2 | Wheat | nucleus | 57.0 | 55.97 |
| EER92583 | Sorghum | cytosol | 55.5 | 54.5 |
| Zm00001d028363_P001 | Maize | cytosol | 55.33 | 54.34 |
| Zm00001d020685_P002 | Maize | cytosol | 58.17 | 54.28 |
| GSMUA_Achr6P04350_001 | Banana | cytosol | 56.5 | 53.81 |
| GSMUA_Achr6P05980_001 | Banana | cytosol | 52.17 | 52.6 |
| HORVU4Hr1G064580.2 | Barley | endoplasmic reticulum, nucleus, plastid | 57.0 | 47.37 |
| Solyc07g064970.2.1 | Tomato | nucleus | 44.0 | 45.44 |
| Os03t0719000-01 | Rice | cytosol, nucleus | 35.67 | 45.34 |
| Solyc12g014490.1.1 | Tomato | cytosol | 42.0 | 44.44 |
| EER90980 | Sorghum | cytosol | 46.33 | 43.92 |
| TraesCS4A01G263800.1 | Wheat | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 45.0 | 43.55 |
| TraesCS4B01G051200.1 | Wheat | nucleus | 44.83 | 43.53 |
| TraesCS4D01G051300.1 | Wheat | cytosol | 42.33 | 42.98 |
| Bra026625.1-P | Field mustard | mitochondrion | 26.0 | 40.62 |
| Solyc01g096680.2.1 | Tomato | nucleus | 36.83 | 38.84 |
| HORVU4Hr1G008440.3 | Barley | nucleus | 44.5 | 37.77 |
| Solyc05g015320.2.1 | Tomato | extracellular | 36.67 | 36.97 |
| Solyc03g007130.2.1 | Tomato | nucleus | 43.0 | 34.82 |
| GSMUA_Achr2P21660_001 | Banana | endoplasmic reticulum, extracellular | 54.83 | 34.7 |
| Solyc11g072280.1.1 | Tomato | extracellular | 41.5 | 32.3 |
| Solyc01g091380.2.1 | Tomato | plastid | 38.83 | 31.32 |
| CDY09401 | Canola | endoplasmic reticulum, golgi, plasma membrane | 29.17 | 30.76 |
| Zm00001d033794_P001 | Maize | nucleus | 46.17 | 27.43 |
Protein Annotations
| EnsemblPlants:Solyc04g008290.2.1 | EnsemblPlantsGene:Solyc04g008290.2 | Gene3D:1.20.58.1520 | GO:GO:0000226 | GO:GO:0000910 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0007049 | GO:GO:0008017 | GO:GO:0008150 | GO:GO:0009987 |
| GO:GO:0016043 | InterPro:MAP65_Ase1_PRC1 | ncoils:Coil | PANTHER:PTHR19321 | PANTHER:PTHR19321:SF5 | PFAM:PF03999 |
| SEG:seg | UniParc:UPI0002766F62 | UniProt:K4BNY5 | MapMan:35.1 | : | : |
Description
No Description!
Coordinates
chr4:+:1974768..1980633
Molecular Weight (calculated)
67693.8 Da
IEP (calculated)
7.556
GRAVY (calculated)
-0.593
Length
600 amino acids
Sequence
(BLAST)
(BLAST)
001: MMAFGSPTSN AHSTSSTCHS LLRELQQIWT DIGESEVDKD RMLLELEREC MEVYRRKVEE AANAKSRLHQ SVAAKEAELA TLMAALGEHN INSPIQSEKM
101: SASLKEQLGL IMPLVDDLKA KKDERVKQFA DIKTQIEKIT SEISGSCNIV NSLSTLNLEE HDLSTRKLSE CQSHLRALQK EKSVRVQRVL DSVNEVHTLC
201: GVLGLDFGET VSNVHPSLHE TSMGQYTNIS DSTLEGLDQA ILKLKTERKV RYQKLKDVAG SLFELWKLMD TTREERRKLS RIISFLDISE SKVVEPGALT
301: LEVIQQVSAE VGRLTKLKAS RMKELVMKRR AELEDLCCRT HIQPDSSTAA DKSSAMIDSG LVDPCELLAN IEAQINKVKD EALSRKEIMD KIERWLSSCD
401: EENWLEDYNL DHTRYSGGRG AHINLKRAER ARITVTKIPG MVDSLVSRTL AWENENQKLF LYDGVRLVSI LEDYKVSRHQ KEEDKKRARD QKKLQDMLLA
501: EKESIYGSRP SPRRSSSFRK TNGFHTNGNG SVTPSPRRNS VGCATPELQT PRSYSGRQNT YFKEMRRLST VPLNFVAMAK EETMSFSSIG GSEPESPPQG
101: SASLKEQLGL IMPLVDDLKA KKDERVKQFA DIKTQIEKIT SEISGSCNIV NSLSTLNLEE HDLSTRKLSE CQSHLRALQK EKSVRVQRVL DSVNEVHTLC
201: GVLGLDFGET VSNVHPSLHE TSMGQYTNIS DSTLEGLDQA ILKLKTERKV RYQKLKDVAG SLFELWKLMD TTREERRKLS RIISFLDISE SKVVEPGALT
301: LEVIQQVSAE VGRLTKLKAS RMKELVMKRR AELEDLCCRT HIQPDSSTAA DKSSAMIDSG LVDPCELLAN IEAQINKVKD EALSRKEIMD KIERWLSSCD
401: EENWLEDYNL DHTRYSGGRG AHINLKRAER ARITVTKIPG MVDSLVSRTL AWENENQKLF LYDGVRLVSI LEDYKVSRHQ KEEDKKRARD QKKLQDMLLA
501: EKESIYGSRP SPRRSSSFRK TNGFHTNGNG SVTPSPRRNS VGCATPELQT PRSYSGRQNT YFKEMRRLST VPLNFVAMAK EETMSFSSIG GSEPESPPQG
001: MLEIGSPNAL FFRTNTTCNN LLRELQKIWV EIGETETEKD RMLMELEREC LQIYQRKVDE AANSKAKLHQ SVASIEAEVA SLMAALGVLN INSPIKLDKG
101: SKSLKEKLAA VTPLVEELRI QKEERMKQFS DIKAQIEKIS GEISGYSDHL NKAMNISLTL EEQDLTLRNL NEYQTHLRTL QKEKSDRLNK VLGYVNEVHA
201: LCGVLGVDFS QTVSAVHPSL HRTDQEQSTN ISDSTLEGLE HMIQKLKTER KSRFQKLKDV VASLFELWNL MDTPQEDRTK FGKVTYVVRS SEANITEPGI
301: LSTETIEQVS TEVDSLSKLK ASRMKELVMK RRSELEDLCR LTHIQPDTST SAEKSTALID SGLVDPSELL ANIEMQINKI KDEAQSRKDI MDRIDRWLSA
401: CEEENWLEEY NLDENRYSAG RGGHVNLKRA ERARVTINKI PGMVDTLIKK TLVWEEDMQK SFLYDGVRLV NILEDYKLTR KQQEEEKKRY RDQKKRQDLL
501: LTQRESIYGS KPSPRRSSSF RKPNGFNISN GNGSVPPTPR RGSVGTTTPD VLLTPRSYSG HHRQNGYFKE VRRLSTTPLN YVAMQKEDTV STTYTSIYSS
601: EPDSPLQG
101: SKSLKEKLAA VTPLVEELRI QKEERMKQFS DIKAQIEKIS GEISGYSDHL NKAMNISLTL EEQDLTLRNL NEYQTHLRTL QKEKSDRLNK VLGYVNEVHA
201: LCGVLGVDFS QTVSAVHPSL HRTDQEQSTN ISDSTLEGLE HMIQKLKTER KSRFQKLKDV VASLFELWNL MDTPQEDRTK FGKVTYVVRS SEANITEPGI
301: LSTETIEQVS TEVDSLSKLK ASRMKELVMK RRSELEDLCR LTHIQPDTST SAEKSTALID SGLVDPSELL ANIEMQINKI KDEAQSRKDI MDRIDRWLSA
401: CEEENWLEEY NLDENRYSAG RGGHVNLKRA ERARVTINKI PGMVDTLIKK TLVWEEDMQK SFLYDGVRLV NILEDYKLTR KQQEEEKKRY RDQKKRQDLL
501: LTQRESIYGS KPSPRRSSSF RKPNGFNISN GNGSVPPTPR RGSVGTTTPD VLLTPRSYSG HHRQNGYFKE VRRLSTTPLN YVAMQKEDTV STTYTSIYSS
601: EPDSPLQG
Arabidopsis Description
MAP65-665-kDa microtubule-associated protein 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9SIS3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.