Factsheet for Solyc01g005080.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400058659	Potato	cytosol, plastid	96.96	90.18
Solyc04g008290.2.1	Tomato	nucleus	77.64	72.33
VIT_01s0011g06330.t01	Wine grape	nucleus	68.87	64.27
KRH09582	Soybean	cytosol, mitochondrion, nucleus	17.35	64.24
KRG89099	Soybean	cytosol	66.91	62.23
AT2G01910.1	Thale cress	nucleus	67.26	61.84
KRH40910	Soybean	cytosol, mitochondrion, nucleus	66.19	61.56
CDY17624	Canola	nucleus	66.37	61.02
Bra024843.1-P	Field mustard	nucleus	66.19	60.86
GSMUA_Achr6P23030_001	Banana	cytosol	60.47	60.14
KRH46955	Soybean	cytosol	29.87	59.01
Bra026811.1-P	Field mustard	cytosol, nucleus, plastid	61.9	58.15
CDY33748	Canola	cytosol	62.08	58.12
CDX81663	Canola	cytosol	62.08	58.03
AT1G14690.1	Thale cress	cytosol	62.43	57.88
CDY03090	Canola	nucleus	64.04	57.65
CDY15798	Canola	endoplasmic reticulum, golgi	42.58	56.4
KRH01846	Soybean	extracellular	34.88	56.36
TraesCS5D01G240800.1	Wheat	nucleus	57.78	54.84
TraesCS5A01G233900.1	Wheat	nucleus	57.42	54.78
EER98994	Sorghum	nucleus	58.14	54.53
TraesCS5B01G232400.1	Wheat	nucleus	57.25	54.33
GSMUA_Achr10P...	Banana	nucleus	58.5	54.14
Os09t0450300-01	Rice	nucleus	56.89	53.45
TraesCS4A01G074200.2	Wheat	nucleus	57.42	52.54
TraesCS4B01G230500.2	Wheat	nucleus	57.25	52.37
TraesCS4D01G231800.3	Wheat	nucleus	57.25	52.37
Os03t0237600-04	Rice	nucleus	56.35	51.64
GSMUA_Achr6P04350_001	Banana	cytosol	57.78	51.27
GSMUA_Achr6P05980_001	Banana	cytosol	54.56	51.26
EER92583	Sorghum	cytosol	55.46	50.74
Zm00001d028363_P001	Maize	cytosol	55.46	50.74
Zm00001d020685_P002	Maize	cytosol	58.14	50.54
Os03t0719000-01	Rice	cytosol, nucleus	37.92	44.92
HORVU4Hr1G064580.2	Barley	endoplasmic reticulum, nucleus, plastid	57.42	44.46
Solyc07g064970.2.1	Tomato	nucleus	44.54	42.86
Solyc12g014490.1.1	Tomato	cytosol	42.75	42.15
TraesCS4A01G263800.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	45.98	41.45
EER90980	Sorghum	cytosol	46.87	41.39
TraesCS4B01G051200.1	Wheat	nucleus	45.62	41.26
TraesCS4D01G051300.1	Wheat	cytosol	43.47	41.12
Bra026625.1-P	Field mustard	mitochondrion	25.94	37.76
HORVU4Hr1G008440.3	Barley	nucleus	45.98	36.35
Solyc01g096680.2.1	Tomato	nucleus	36.85	36.2
Solyc05g015320.2.1	Tomato	extracellular	37.57	35.29
GSMUA_Achr2P21660_001	Banana	endoplasmic reticulum, extracellular	55.64	32.81
Solyc03g007130.2.1	Tomato	nucleus	42.4	31.98
Solyc11g072280.1.1	Tomato	extracellular	42.04	30.48
Solyc01g091380.2.1	Tomato	plastid	38.64	29.03
CDY09401	Canola	endoplasmic reticulum, golgi, plasma membrane	27.01	26.54
Zm00001d033794_P001	Maize	nucleus	45.8	25.35

Protein Annotations

EnsemblPlants:Solyc01g005080.2.1	EnsemblPlantsGene:Solyc01g005080.2	Gene3D:1.20.58.1520	GO:GO:0000226	GO:GO:0000910	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0007049	GO:GO:0008017	GO:GO:0008150	GO:GO:0009987
GO:GO:0016043	InterPro:MAP65_Ase1_PRC1	ncoils:Coil	PANTHER:PTHR19321	PANTHER:PTHR19321:SF5	PFAM:PF03999
SEG:seg	UniParc:UPI00027618D4	UniProt:K4AS75	MapMan:35.1	:	:

Description

No Description!

Coordinates

chr1:-:67325..72180

Molecular Weight (calculated)

63225.6 Da

IEP (calculated)

8.195

GRAVY (calculated)

-0.541

Length

559 amino acids

Sequence
(BLAST)

001: MLSELERECL EVYRRKVEEA ANTKACLHQS VATKEAEVAT LMAALGELNI NSLKQPEKKS ASLKEQLAFV TPLIDDLRVK KDERVKQFAD VKTQIDKITS
101: EISEYSNIIN AMSSLILEDH DLSLRNLSEY KSHLRALQKE KSERIQKVVD CVNEVHSLCG VLGLDFGKTV SDVHPSLHET SLGQSTNISV SALESLEQAI
201: FRLKTERKVR YQKLKDVAGL LFELWTLMDT TREEKSKLSR ITSVLRLSEA EVTEPGALSL EVIEQISTEV ERLTKLKASR MKELVIKRRA ELEDICYKNH
301: IDPDPSTSAD KSSAMIDSGL VDPCELLANI EAQINKAKDE ALSRKDIMDK IDWWLFACEE ENWLEDYNQD YRRYSGGRGA HINLKRAEQA RIKVTKIPVV
401: VKALINKTLA WEDEKQKLFL YDGVRLVSIL EDYKVVRKQK EESKKRAQDQ KKLHDMLLAE KKSLYGSKPS PRRSSSFRKG NGYNANGHGS VTPSPRRSSM
501: SCATPELLTP RSNSVRHNGY FKEMTRLSTG PLNFVSMAKE DTVSFSSISG SDPESPLQA

Best Arabidopsis Sequence Match ( AT2G01910.2 )
(BLAST)

001: MLMELERECL QIYQRKVDEA ANSKAKLHQS VASIEAEVAS LMAALGVLNI NSPIKLDKGS KSLKEKLAAV TPLVEELRIQ KEERMKQFSD IKAQIEKISG
101: EISGYSDHLN KAMNISLTLE EQDLTLRNLN EYQTHLRTLQ KEKSDRLNKV LGYVNEVHAL CGVLGVDFSQ TVSAVHPSLH RTDQEQSTNI SDSTLEGLEH
201: MIQKLKTERK SRFQKLKDVV ASLFELWNLM DTPQEDRTKF GKVTYVVRSS EANITEPGIL STETIEQVST EVDSLSKLKA SRMKELVMKR RSELEDLCRL
301: THIQPDTSTS AEKSTALIDS GLVDPSELLA NIEMQINKIK DEAQSRKDIM DRIDRWLSAC EEENWLEEYN LDENRYSAGR GGHVNLKRAE RARVTINKIP
401: GMVDTLIKKT LVWEEDMQKS FLYDGVRLVN ILEDYKLTRK QQEEEKKRYR DQKKRQDLLL TQRESIYGSK PSPRRSSSFR KPNGFNISNG NGSVPPTPRR
501: GSVGTTTPDV LLTPRSYSGH HRQNGYFKEV RRLSTTPLNY VAMQKEDTVS TTYTSIYSSE PDSPLQG

Arabidopsis Description

MAP65-665-kDa microtubule-associated protein 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9SIS3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.