Factsheet for Solyc11g072280.1.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 4

Predictors

GFP

MS/MS

Papers

extracellular: 29876421

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g107160.2.1	nucleus
Solyc03g007130.2.1
Solyc03g043720.2.1
Solyc05g014370.2.1	nucleus
Solyc06g051040.2.1	nucleus
Solyc11g072280.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G51600.1	Solyc03g043720.2.1	AT2G22640.1	25262777
AT5G51600.1	Solyc01g107160.2.1	AT3G19590.1	25262777
AT5G51600.1	Solyc01g107160.2.1	AT3G19590.1	25262777
AT5G51600.1	Solyc05g014370.2.1	AT3G25980.1	25262777
AT5G51600.1	Solyc05g014370.2.1	AT3G25980.1	25262777
AT5G51600.1	Solyc06g051040.2.1	AT5G05510.1	25262777
AT5G51600.1	Solyc06g051040.2.1	AT5G05510.1	25262777
AT5G51600.1	Solyc03g007130.2.1	AT5G51600.1	25262777
AT5G51600.1	Solyc11g072280.1.1	AT5G51600.1	25262777

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400070431	Potato	nucleus	85.73	95.25
Solyc03g007130.2.1	Tomato	nucleus	70.17	73.01
VIT_16s0022g01820.t01	Wine grape	nucleus	64.33	67.95
KRG92454	Soybean	nucleus	58.88	62.45
KRH38719	Soybean	cytosol	52.14	62.42
KRH34346	Soybean	cytosol	59.53	61.61
GSMUA_Achr1P02510_001	Banana	cytosol	53.44	61.04
GSMUA_Achr5P11340_001	Banana	cytosol	52.27	60.42
AT5G51600.1	Thale cress	cytosol	54.73	59.69
Bra023930.1-P	Field mustard	cytosol	54.73	59.52
Bra028266.1-P	Field mustard	cytosol	54.47	59.41
GSMUA_Achr5P10040_001	Banana	nucleus	47.86	58.2
Zm00001d011615_P001	Maize	cytosol, nucleus, plastid	52.14	57.02
TraesCS3B01G297900.1	Wheat	cytosol	50.97	56.96
TraesCS3A01G264600.1	Wheat	cytosol	50.84	56.89
TraesCS3D01G264700.2	Wheat	cytosol	50.84	56.81
OQU87349	Sorghum	golgi, vacuole	52.53	56.64
CDY00270	Canola	nucleus	39.17	56.03
Zm00001d030420_P001	Maize	cytosol	16.6	55.9
Bra010069.1-P	Field mustard	nucleus	39.04	55.84
TraesCS1A01G378900.1	Wheat	cytosol	48.77	55.54
TraesCS1D01G386100.1	Wheat	cytosol	49.03	55.51
CDX86911	Canola	nucleus	38.78	55.47
TraesCS1B01G400200.1	Wheat	cytosol	48.9	55.36
CDX87240	Canola	nucleus	38.26	54.53
AT5G62250.1	Thale cress	nucleus	38.78	54.46
Bra035900.1-P	Field mustard	nucleus	38.13	54.34
CDY16786	Canola	nucleus	38.13	54.14
HORVU1Hr1G083810.7	Barley	cytosol	47.99	54.09
Zm00001d043831_P001	Maize	cytosol, mitochondrion	51.49	54.09
Os05t0552900-01	Rice	cytosol	49.42	52.12
HORVU3Hr1G063620.1	Barley	plastid	50.32	52.01
KRH09228	Soybean	cytosol	34.37	49.53
Solyc07g064970.2.1	Tomato	nucleus	36.58	48.54
Solyc01g091380.2.1	Tomato	plastid	46.69	48.39
Os02t0126300-01	Rice	plasma membrane	34.11	47.05
Solyc12g014490.1.1	Tomato	cytosol	34.11	46.38
EES06214	Sorghum	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	33.46	44.1
TraesCS6A01G089500.2	Wheat	nucleus	30.74	43.25
Zm00001d006888_P001	Maize	cytosol	14.92	43.07
TraesCSU01G016800.1	Wheat	nucleus	30.48	42.73
TraesCS6B01G111900.1	Wheat	nucleus	30.09	42.26
Zm00001d053956_P001	Maize	nucleus	32.56	42.11
Solyc01g005080.2.1	Tomato	cytosol	30.48	42.04
Solyc05g015320.2.1	Tomato	extracellular	32.17	41.68
Solyc04g008290.2.1	Tomato	nucleus	32.3	41.5
Solyc01g096680.2.1	Tomato	nucleus	30.61	41.48
Zm00001d015096_P002	Maize	nucleus	32.43	40.92
Zm00001d046884_P001	Maize	plastid	20.49	32.92

Protein Annotations

EnsemblPlants:Solyc11g072280.1.1	EnsemblPlantsGene:Solyc11g072280.1	Gene3D:1.20.58.1520	GO:GO:0000226	GO:GO:0000910	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0007049	GO:GO:0008017	GO:GO:0008150	GO:GO:0009987
GO:GO:0016043	InterPro:MAP65_Ase1_PRC1	ncoils:Coil	PANTHER:PTHR19321	PANTHER:PTHR19321:SF7	PFAM:PF03999
SEG:seg	UniParc:UPI0002769B21	UniProt:K4DAT5	MapMan:13.4.3.5	:	:

Description

No Description!

Coordinates

chr11:-:55475698..55482324

Molecular Weight (calculated)

87200.9 Da

IEP (calculated)

5.560

GRAVY (calculated)

-0.632

Length

771 amino acids

Sequence
(BLAST)

001: MWKLRTLQKP SSSSLSAAGN SSGDFSFSGE NILFIFDMST PQNDPLLQTE TTCGLLLHEL QIIWDEVGEC DTERDRMLFE IERECLEVYR RKVDQANKSR
101: AQLRQAIADS EAELAAICSA MGERPVHMKQ SDKSQGGLKA ELRAVLPELE EMRKRKSDRK NQFIEVFKQI QMIKNEISRL TSASLVVDES DLSLRKLEEF
201: HMELHALQKE KSERLTLVLD HLGALKSLCS VLGMDFEHTI NEVDPSFGES EEAKNICNDT IQNLAATIQR LQEVKLQRMQ RLQDLTTSML ELWNLMDTPI
301: EEQQLFHNVT CKIAAKEHEI TEPNMLSMEF ITYVEEEVGR LEELKASKMK ELVLKKKSEL EEIYRKTHMV GDSDSALNIA IEAIESGAVD DADAVLEQIE
401: LQIAQVKEEA FSRKDILDRV EKWIAACEEE CWLEEYNRDE NRYNAGRGTH LTLKRAEKAR ALVNKLPAMV EALASKTKAW ENERGTQFSY DGIPLLSMLE
501: EYTILREEKE LERKKQRDQK KLQGQLMAEQ ESLYGSKPSP MKNQSAKKGP KLSCGGAPSN RRLSLGGTMQ QTCKTELPYS TKATPNTRQA KKSERFHQLD
601: QFNHPTDDGF GALSTGRRGG LGIDELPSKK QLISALNGSE VETAVMRKPF SPISSKGSSK SNATNILGDM NRKHNETMTK TPLSNHTTPV STPVKSISTY
701: EEENRTPAKA MPIPVPSTPS TVSVPMQTTT PGPAVVTPYN SKLVENTHVK EEIEYSFEES RLEFYLQRTH I

Best Arabidopsis Sequence Match ( AT5G51600.1 )
(BLAST)

001: MASVQKDPIL QVETTCGSLL FELQIIWDEV GETETDRDQM LLELERECLE VYRRKVDQAN RCRAQLRQAI ADAEAQLAAI CSAMGERPVH IRQSDQSVGS
101: LKQELGRILP ELEEMQKRKV ERRNQFIVVM EQIDSITNDI KGQGELVHSE PLIDETNLSM RKLEELHCQL QVLQKEKIDR VETIRKHLCT LYSHCSVLGM
201: DFNEVVGQVN PTLSDPEGPR SLSDHTIEKL GAAVQKLMEV KIQRMQRLQD LATTMLELWN LMDTPIEEQQ EYQHITCNIA ASEHEITEAN SLSEDFIKYV
301: EAEVVRLDEV KASKMKELVL KKRSELEEIC RKTHLLPVSD SAIDQTIVAI ESGIVDATMV LEHLEQHISK IKEEALSRKE ILERVEKWLS ACDEESWLEE
401: YNRDDNRYNA GRGAHLTLKR AEKARNLVTK LPGMVEALAS KTIVWEQENG IEFLYDGIRL LSMLEEYNIL RQEREEEHRR QRDQKKLQGQ LIAEQEALYG
501: SKPSPSKPLG GKKAPRMSTG GASNRRLSLG AAMHQTPKPN KKADHRHNDG ALSNGRRGLD IAGLPSRKQS MNPSEMLQSP LVRKPFSPIS TTVVASKANI
601: ATTTTQQLPK NNAVNEISSF ATPIKNNNIL RNLEEEKMMT MMMQTPKNVA AMIPIPSTPA TVSVPMHTAP TPFTNNARLM SEKPEVVEYS FEERRLAFML
701: QSECRLV

Arabidopsis Description

MAP65-365-kDa microtubule-associated protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FHM4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.