Factsheet for GSMUA_Achr5P10040_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr1P02510_001
GSMUA_Achr4P03390_001	nucleus
GSMUA_Achr4P11860_001
GSMUA_Achr5P10040_001
GSMUA_Achr5P11340_001
GSMUA_Achr5P14270_001	nucleus
GSMUA_Achr6P21190_001	nucleus
GSMUA_Achr9P23800_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G51600.1	GSMUA_Achr4P11860_001	AT2G22640.1	25262777
AT5G51600.1	GSMUA_Achr9P23800_001	AT2G22640.1	25262777
AT5G51600.1	GSMUA_Achr4P03390_001	AT3G19590.1	25262777
AT5G51600.1	GSMUA_Achr4P03390_001	AT3G19590.1	25262777
AT5G51600.1	GSMUA_Achr6P21190_001	AT3G25980.1	25262777
AT5G51600.1	GSMUA_Achr6P21190_001	AT3G25980.1	25262777
AT5G51600.1	GSMUA_Achr5P14270_001	AT5G05510.1	25262777
AT5G51600.1	GSMUA_Achr5P14270_001	AT5G05510.1	25262777
AT5G51600.1	GSMUA_Achr1P02510_001	AT5G51600.1	25262777
AT5G51600.1	GSMUA_Achr5P10040_001	AT5G51600.1	25262777
AT5G51600.1	GSMUA_Achr5P11340_001	AT5G51600.1	25262777

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P11340_001	Banana	cytosol	64.98	61.77
GSMUA_Achr1P02510_001	Banana	cytosol	65.3	61.33
VIT_16s0022g01820.t01	Wine grape	nucleus	63.56	55.21
VIT_15s0048g00860.t01	Wine grape	cytosol, nucleus, plasma membrane	50.95	53.92
KRH38719	Soybean	cytosol	54.57	53.73
KRG92454	Soybean	nucleus	59.15	51.58
CDX86911	Canola	nucleus	43.85	51.58
KRH34346	Soybean	cytosol	60.25	51.28
Bra010069.1-P	Field mustard	nucleus	43.53	51.21
CDY00270	Canola	nucleus	43.53	51.21
Solyc03g007130.2.1	Tomato	nucleus	59.62	51.01
AT5G51600.1	Thale cress	cytosol	56.78	50.92
Bra035900.1-P	Field mustard	nucleus	43.38	50.83
CDX87240	Canola	nucleus	43.22	50.65
CDY16786	Canola	nucleus	43.38	50.64
PGSC0003DMT400079660	Potato	cytosol	59.31	50.47
Bra028266.1-P	Field mustard	cytosol	55.84	50.07
Bra023930.1-P	Field mustard	cytosol	55.84	49.93
AT5G62250.1	Thale cress	nucleus	43.22	49.91
PGSC0003DMT400070431	Potato	nucleus	54.26	49.57
Solyc11g072280.1.1	Tomato	extracellular	58.2	47.86
GSMUA_Achr7P06200_001	Banana	cytosol	41.96	45.24
GSMUA_Achr3P13450_001	Banana	cytosol	41.64	44.82
GSMUA_Achr4P19380_001	Banana	cytosol	41.32	44.71
GSMUA_Achr4P03890_001	Banana	cytosol	40.85	44.2
KRH40591	Soybean	nucleus	47.0	42.51
PGSC0003DMT400033224	Potato	nucleus	50.16	42.12
AT3G60840.1	Thale cress	cytosol	44.95	42.1
Solyc01g091380.2.1	Tomato	plastid	49.37	42.07
GSMUA_Achr6P23030_001	Banana	cytosol	37.22	41.99
KRH09228	Soybean	cytosol	35.33	41.87
Bra014467.1-P	Field mustard	cytosol	42.74	41.82
CDY62713	Canola	cytosol	45.11	41.81
CDX89081	Canola	cytosol	44.95	41.55
GSMUA_Achr11P...	Banana	nucleus	37.38	41.22
GSMUA_Achr9P17360_001	Banana	cytosol	36.91	40.28
GSMUA_Achr10P...	Banana	nucleus	38.17	40.07
GSMUA_Achr6P05980_001	Banana	cytosol	36.75	39.16
GSMUA_Achr6P04350_001	Banana	cytosol	38.8	39.05
GSMUA_Achr2P21660_001	Banana	endoplasmic reticulum, extracellular	40.06	26.79

Protein Annotations

EnsemblPlants:GSMUA_Achr5P10040_001	EnsemblPlants:GSMUA_Achr5T10040_001	EnsemblPlantsGene:GSMUA_Achr5G10040_001	Gene3D:1.20.58.1520	GO:GO:0000226	GO:GO:0000910
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0007049	GO:GO:0008017	GO:GO:0008150
GO:GO:0009987	GO:GO:0016043	InterPro:MAP65_Ase1_PRC1	ncoils:Coil	PANTHER:PTHR19321	PANTHER:PTHR19321:SF7
PFAM:PF03999	SEG:seg	UniParc:UPI000295C4DF	UniProt:M0SX83	MapMan:13.4.3.5	:

Description

65-kDa microtubule-associated protein 3 [Source:GMGC_GENE;Acc:GSMUA_Achr5G10040_001]

Coordinates

chr5:+:7173948..7177253

Molecular Weight (calculated)

71761.0 Da

IEP (calculated)

4.950

GRAVY (calculated)

-0.647

Length

634 amino acids

Sequence
(BLAST)

001: MARNPNDPLP QVETTCESLL NELQVIWDEL GESDAEKDKM LLELEQECLN VYRRKVDQAN LYRAQLQQQI ADSEAEIAAI CSSMGERPVH IRQSPGFLKE
101: QLKATALKLE EMHKRKSERL NQFLEVLDQI QKISTEICPT EYDPSKFAID GSDLSVRILE DLQTQLQSLQ KEKSERLRQV MDHLNTLKKL CLVVGIDFKE
201: TIREVQPSLD QDEGSKNISN STIESLASAI ENMRKVKIKR MQKLQDLATA MLELWNLMDT PNEEQQQFQK VTCNIAASEQ EFTEPNALSM DFINYVEAEV
301: LRLEQLKASK LKELVLRKKT ELEEIRRRTH LVAEADYEPE FSIDAVEAGA TDASLVLEHI EAQISTAKEE AFSRKDILER VEKWLAACEE EAWLEEYNRD
401: ENRYSAGRGA HLTLKRAEKA RALVSKIPAM VDTLENKVTA WEKERGTEFI YDGAPLLSML EQYITVSQEK EQERKRQRDQ KKLQGQLTAE KEVLYGSKPS
501: PAKLQSFKKT HKTLTLSPSQ RISLGAAATN SPKKAYEVAI NRGNDIFSSV GTRGIDNAGL SEKSSSNATA TATFETSSPS EDVKETTKAM PVSTPKSPRK
601: VAADGTAEGD ATEYSFEERR LVFCLSRKRD EGAL

Best Arabidopsis Sequence Match ( AT5G51600.1 )
(BLAST)

001: MASVQKDPIL QVETTCGSLL FELQIIWDEV GETETDRDQM LLELERECLE VYRRKVDQAN RCRAQLRQAI ADAEAQLAAI CSAMGERPVH IRQSDQSVGS
101: LKQELGRILP ELEEMQKRKV ERRNQFIVVM EQIDSITNDI KGQGELVHSE PLIDETNLSM RKLEELHCQL QVLQKEKIDR VETIRKHLCT LYSHCSVLGM
201: DFNEVVGQVN PTLSDPEGPR SLSDHTIEKL GAAVQKLMEV KIQRMQRLQD LATTMLELWN LMDTPIEEQQ EYQHITCNIA ASEHEITEAN SLSEDFIKYV
301: EAEVVRLDEV KASKMKELVL KKRSELEEIC RKTHLLPVSD SAIDQTIVAI ESGIVDATMV LEHLEQHISK IKEEALSRKE ILERVEKWLS ACDEESWLEE
401: YNRDDNRYNA GRGAHLTLKR AEKARNLVTK LPGMVEALAS KTIVWEQENG IEFLYDGIRL LSMLEEYNIL RQEREEEHRR QRDQKKLQGQ LIAEQEALYG
501: SKPSPSKPLG GKKAPRMSTG GASNRRLSLG AAMHQTPKPN KKADHRHNDG ALSNGRRGLD IAGLPSRKQS MNPSEMLQSP LVRKPFSPIS TTVVASKANI
601: ATTTTQQLPK NNAVNEISSF ATPIKNNNIL RNLEEEKMMT MMMQTPKNVA AMIPIPSTPA TVSVPMHTAP TPFTNNARLM SEKPEVVEYS FEERRLAFML
701: QSECRLV

Arabidopsis Description

MAP65-365-kDa microtubule-associated protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FHM4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.