Factsheet for PGSC0003DMT400079660

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400043032
PGSC0003DMT400045025	nucleus
PGSC0003DMT400066160	nucleus
PGSC0003DMT400070431
PGSC0003DMT400079660

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G51600.1	PGSC0003DMT400043032	AT2G22640.1	25262777
AT5G51600.1	PGSC0003DMT400066160	AT3G19590.1	25262777
AT5G51600.1	PGSC0003DMT400066160	AT3G19590.1	25262777
AT5G51600.1	PGSC0003DMT400045025	AT3G25980.1	25262777
AT5G51600.1	PGSC0003DMT400045025	AT3G25980.1	25262777
AT5G51600.1	PGSC0003DMT400070431	AT5G51600.1	25262777
AT5G51600.1	PGSC0003DMT400079660	AT5G51600.1	25262777

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g007130.2.1	Tomato	nucleus	95.97	96.49
PGSC0003DMT400070431	Potato	nucleus	70.07	75.22
VIT_16s0022g01820.t01	Wine grape	nucleus	70.2	71.64
KRG92454	Soybean	nucleus	63.49	65.06
KRH34346	Soybean	cytosol	64.03	64.03
KRH38719	Soybean	cytosol	55.03	63.66
GSMUA_Achr5P11340_001	Banana	cytosol	56.91	63.57
GSMUA_Achr1P02510_001	Banana	cytosol	57.45	63.41
Bra028266.1-P	Field mustard	cytosol	59.46	62.66
Bra023930.1-P	Field mustard	cytosol	59.6	62.62
AT5G51600.1	Thale cress	cytosol	58.66	61.81
TraesCS3A01G264600.1	Wheat	cytosol	55.3	59.8
TraesCS3B01G297900.1	Wheat	cytosol	55.3	59.71
TraesCS3D01G264700.2	Wheat	cytosol	55.3	59.71
GSMUA_Achr5P10040_001	Banana	nucleus	50.47	59.31
Zm00001d011615_P001	Maize	cytosol, nucleus, plastid	56.11	59.29
Zm00001d030420_P001	Maize	cytosol	17.99	58.52
OQU87349	Sorghum	golgi, vacuole	56.11	58.46
CDY00270	Canola	nucleus	41.74	57.7
Bra010069.1-P	Field mustard	nucleus	41.48	57.33
Zm00001d043831_P001	Maize	cytosol, mitochondrion	55.7	56.54
CDX86911	Canola	nucleus	40.67	56.22
CDX87240	Canola	nucleus	40.81	56.19
AT5G62250.1	Thale cress	nucleus	40.81	55.37
Bra035900.1-P	Field mustard	nucleus	40.13	55.27
TraesCS1B01G400200.1	Wheat	cytosol	50.47	55.21
TraesCS1D01G386100.1	Wheat	cytosol	50.47	55.21
TraesCS1A01G378900.1	Wheat	cytosol	50.07	55.1
CDY16786	Canola	nucleus	40.13	55.06
HORVU3Hr1G063620.1	Barley	plastid	54.63	54.56
Os05t0552900-01	Rice	cytosol	53.15	54.17
HORVU1Hr1G083810.7	Barley	cytosol	49.53	53.95
KRH09228	Soybean	cytosol	36.91	51.4
PGSC0003DMT400057428	Potato	cytosol	38.66	49.57
Os02t0126300-01	Rice	plasma membrane	36.78	49.02
PGSC0003DMT400033224	Potato	nucleus	49.53	48.87
PGSC0003DMT400033471	Potato	cytosol	35.97	46.69
EES06214	Sorghum	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	35.97	45.81
TraesCS6A01G089500.2	Wheat	nucleus	32.89	44.71
Zm00001d006888_P001	Maize	cytosol	15.97	44.57
TraesCSU01G016800.1	Wheat	nucleus	32.75	44.36
Zm00001d053956_P001	Maize	nucleus	35.3	44.13
TraesCS6B01G111900.1	Wheat	nucleus	32.35	43.9
Zm00001d015096_P002	Maize	nucleus	35.3	43.04
PGSC0003DMT400074853	Potato	cytosol	34.36	43.03
PGSC0003DMT400075869	Potato	nucleus	34.36	42.74
PGSC0003DMT400058659	Potato	cytosol, plastid	34.36	42.6
PGSC0003DMT400008510	Potato	plastid	27.92	41.52
Zm00001d046884_P001	Maize	plastid	21.88	33.96

Protein Annotations

Gene3D:1.20.58.1520	EntrezGene:102606305	MapMan:13.4.3.5	ncoils:Coil	GO:GO:0000226	GO:GO:0000910
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0007049	GO:GO:0008017	GO:GO:0008150
GO:GO:0009987	GO:GO:0016043	UniProt:M1D287	InterPro:MAP65_Ase1_PRC1	PFAM:PF03999	EnsemblPlantsGene:PGSC0003DMG400031025
PGSC:PGSC0003DMG400031025	EnsemblPlants:PGSC0003DMT400079660	PANTHER:PTHR19321	PANTHER:PTHR19321:SF7	UniParc:UPI0002964F42	RefSeq:XP_006348061.1
SEG:seg	:	:	:	:	:

Description

Microtubule-associated protein [Source:PGSC_GENE;Acc:PGSC0003DMG400031025]

Coordinates

chr3:-:40852754..40856539

Molecular Weight (calculated)

84400.9 Da

IEP (calculated)

6.207

GRAVY (calculated)

-0.608

Length

745 amino acids

Sequence
(BLAST)

001: MTAAQGDPIQ QMETTCGTLL YELQIIWDEV GESDTERDKM LYELERECLE VYRRKVDQAN KSRAQLRQAI ADAEAELAAI CSAMGERPVH IRQSDQSLGG
101: LKAELRTILP ELEEMRNRKS DRKNQFIEVT KQLQKIRDEI FNPTGCTSTS VVVDKSDLSL RKLEELHAEL QALQKEKNER LKQVLDHLST LNSLCLVLGM
201: DFKHTVNEVH PSLGESEGTK NISNDTIQHL AAAIGRLREV KLLRMKRLQE LASSMLELWN LMDTPIEEQQ TFQNVTCKIA ASEHEITEPN ILSVEFINYV
301: EGELSRLEEL KASKMKELVL KKRSELEEIC RKTHMVADSD NAMDVAIEAI ESGAVDAASI LEQIELQIAQ VKEEAFSRKE ILDKVEKWIA ACEEECWLEE
401: YNRDENRYNA GRGAHLTLKR AEKARTLVNK LPAMVEALAS KTKAWESERG IDFTYDGIRL LAMLEEYNIL RQEKEEERKR QRDQKKLQGQ LMAEHEAIYG
501: SKPSPMKNQS AKKGRRMSCS GATNRRLSVG GTMLQTPKLS IGGTMPQTPK TEFHSTKATP NTHHTKKSDL FHQRDQFNYS NDDGLPALSA GRKGLDLAGL
601: PLKKQSNSVN GCEMEKTMTR KPFSPISSTD SSKFNATNIL EDLNRKHNHN EMVNKMLPSS QIPFSTPVKT LYTTEEENRT PLAVATIPVT STPLTVSAPM
701: QTAVTPIHNA LVPYNYSKTV EEIPVEIEYS FEERRLGFVL PRTQV

Best Arabidopsis Sequence Match ( AT5G51600.1 )
(BLAST)

001: MASVQKDPIL QVETTCGSLL FELQIIWDEV GETETDRDQM LLELERECLE VYRRKVDQAN RCRAQLRQAI ADAEAQLAAI CSAMGERPVH IRQSDQSVGS
101: LKQELGRILP ELEEMQKRKV ERRNQFIVVM EQIDSITNDI KGQGELVHSE PLIDETNLSM RKLEELHCQL QVLQKEKIDR VETIRKHLCT LYSHCSVLGM
201: DFNEVVGQVN PTLSDPEGPR SLSDHTIEKL GAAVQKLMEV KIQRMQRLQD LATTMLELWN LMDTPIEEQQ EYQHITCNIA ASEHEITEAN SLSEDFIKYV
301: EAEVVRLDEV KASKMKELVL KKRSELEEIC RKTHLLPVSD SAIDQTIVAI ESGIVDATMV LEHLEQHISK IKEEALSRKE ILERVEKWLS ACDEESWLEE
401: YNRDDNRYNA GRGAHLTLKR AEKARNLVTK LPGMVEALAS KTIVWEQENG IEFLYDGIRL LSMLEEYNIL RQEREEEHRR QRDQKKLQGQ LIAEQEALYG
501: SKPSPSKPLG GKKAPRMSTG GASNRRLSLG AAMHQTPKPN KKADHRHNDG ALSNGRRGLD IAGLPSRKQS MNPSEMLQSP LVRKPFSPIS TTVVASKANI
601: ATTTTQQLPK NNAVNEISSF ATPIKNNNIL RNLEEEKMMT MMMQTPKNVA AMIPIPSTPA TVSVPMHTAP TPFTNNARLM SEKPEVVEYS FEERRLAFML
701: QSECRLV

Arabidopsis Description

MAP65-365-kDa microtubule-associated protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FHM4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.