CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra010069.1-P	Field mustard	nucleus	99.07	99.07
CDX86911	Canola	nucleus	96.1	96.1
CDX87240	Canola	nucleus	88.31	87.99
CDY16786	Canola	nucleus	87.76	87.11
AT5G62250.1	Thale cress	nucleus	87.38	85.79
Zm00001d030420_P001	Maize	cytosol	22.45	52.84
KRH38719	Soybean	cytosol	54.73	45.81
GSMUA_Achr5P11340_001	Banana	cytosol	54.73	44.23
GSMUA_Achr5P10040_001	Banana	nucleus	51.21	43.53
GSMUA_Achr1P02510_001	Banana	cytosol	53.99	43.11
KRG92454	Soybean	nucleus	58.07	43.05
VIT_16s0022g01820.t01	Wine grape	nucleus	58.07	42.88
KRH34346	Soybean	cytosol	58.26	42.15
Solyc03g007130.2.1	Tomato	nucleus	57.88	42.11
PGSC0003DMT400079660	Potato	cytosol	57.7	41.74
TraesCS3B01G297900.1	Wheat	cytosol	53.43	41.74
TraesCS3D01G264700.2	Wheat	cytosol	53.25	41.59
TraesCS3A01G264600.1	Wheat	cytosol	53.06	41.51
PGSC0003DMT400070431	Potato	nucleus	52.5	40.78
KRH09228	Soybean	cytosol	40.45	40.75
Os02t0126300-01	Rice	plasma membrane	41.93	40.43
OQU87349	Sorghum	golgi, vacuole	52.5	39.58
Zm00001d011615_P001	Maize	cytosol, nucleus, plastid	51.58	39.43
CDY19902	Canola	cytosol	42.67	39.32
CDY17313	Canola	cytosol	42.67	39.32
CDY14300	Canola	nucleus	42.3	39.18
Solyc11g072280.1.1	Tomato	extracellular	56.03	39.17
CDX89305	Canola	cytosol	41.19	39.02
Zm00001d006888_P001	Maize	cytosol	18.92	38.2
CDY06596	Canola	cytosol	41.74	38.2
TraesCS1A01G378900.1	Wheat	cytosol	47.87	38.11
CDY20777	Canola	cytosol	41.56	38.03
HORVU3Hr1G063620.1	Barley	plastid	52.5	37.94
TraesCS1D01G386100.1	Wheat	cytosol	47.87	37.89
TraesCS1B01G400200.1	Wheat	cytosol	47.87	37.89
TraesCSU01G016800.1	Wheat	nucleus	38.4	37.64
Zm00001d043831_P001	Maize	cytosol, mitochondrion	51.21	37.6
TraesCS6A01G089500.2	Wheat	nucleus	38.22	37.59
TraesCS6B01G111900.1	Wheat	nucleus	37.85	37.16
Os05t0552900-01	Rice	cytosol	50.09	36.94
EES06214	Sorghum	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	40.07	36.92
Zm00001d053956_P001	Maize	nucleus	40.63	36.74
HORVU1Hr1G083810.7	Barley	cytosol	46.57	36.7
CDY36737	Canola	nucleus	42.3	36.19
CDY33748	Canola	cytosol	39.33	35.51
CDX81663	Canola	cytosol	39.33	35.45
CDY12006	Canola	cytosol	42.3	35.4
CDY17624	Canola	nucleus	39.7	35.2
CDX89081	Canola	cytosol	44.34	34.84
CDY62713	Canola	cytosol	43.78	34.5
Zm00001d015096_P002	Maize	nucleus	38.96	34.37
CDY03090	Canola	nucleus	39.52	34.3
CDX94287	Canola	nucleus	41.37	33.69
CDY18372	Canola	nucleus	36.73	33.56
CDX93308	Canola	nucleus	36.36	33.28
CDY27637	Canola	cytosol	34.14	32.28
CDX84899	Canola	extracellular, nucleus, plastid	33.95	31.88
CDY15798	Canola	endoplasmic reticulum, golgi	24.49	31.28
CDX97365	Canola	nucleus	42.12	28.02
Zm00001d046884_P001	Maize	plastid	23.75	26.67
CDY09401	Canola	endoplasmic reticulum, golgi, plasma membrane	21.89	20.74

Protein Annotations

EnsemblPlants:CDY00270	EnsemblPlantsGene:GSBRNA2T00109836001	Gene3D:1.20.58.1520	GO:A0A078EDV6	GO:GO:0000226	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0008017	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043
InterPro:MAP65_Ase1_PRC1	ncoils:Coil	PANTHER:PTHR19321	PANTHER:PTHR19321:SF7	PFAM:PF03999	ProteinID:CDY00270
ProteinID:CDY00270.1	SEG:seg	UniParc:UPI0004EEBCEE	MapMan:35.1	:	:

Description

BnaA06g21710D

Coordinates

chrLK031917:+:644852..647135

Molecular Weight (calculated)

62819.4 Da

IEP (calculated)

4.953

GRAVY (calculated)

-0.807

Length

539 amino acids

Sequence
(BLAST)

001: MSKTQFESIC STLLQELEII WDEVGETETE REKILIEIED ECRVVYCRKI EKVKEERNRL RQDIVDSKSR VIAICSVMEE PSSLGRQHQS DQSGRRSLKE
101: ELVKILQKLE DMEKRKSERK DQFIQVIEDI KCIRDEINEE SVDTCSSDFS IDESDLSLRK LEELHSELYT LQEEKRNRMK HIQDHLRTLE SLCSVLGLKY
201: GETVTKIHPS LVESEGSRSI SNTTLDKLAS SVNQWHETKI QRMQELQDLV TTMLEFWNLM DTPAEEQQKF INVSCNIAAT VSEITKPNSL STDLLEEVKD
301: ELSRLEELKW SKMKELVLKK RSELEEICRR THIVLEEQDI SVENVIKAIE SGDVNPENIL EQIEYQAGKV KEEALSRKEI LEKAEKWLNA CEEENWLEEY
401: NQDENRYNAG KGSHLILKRA EKARALVNKL PAMVEALVSK ITIWESEKEA EFLFDGNRLL WMLEEYTELR EEKEQERRRK RDLKKLQGQV TSEQDKGTPT
501: RPQSAKKGLK VSTNKRFASS PHTDSPRSAK SFTSQSRYG

Best Arabidopsis Sequence Match ( AT5G62250.1 )
(BLAST)

001: MSKSQIESTW SSLLQELEII WKEVGETETE REKILIEIEE ECREVYNRKI EKVKEEKIRI KQEIADSEAR VIDICSVMEE PPILGRHHQS DQQSGNGRSL
101: KDELVKILQK LEEMEKRKSE RKIQFIQVID DIRCVREEIN GESDDETCSS DFSADESDLS LRKLEELHRE LYTLQEQKRN RVKQIQDNIR TLESLCSVLG
201: LNFRETVTKI HPSLVDTEGS RSISNETLDK LASSVQQWHE TKIQRMQELQ DLVTTMLEFW NLMDTPAEEQ QKFMDVSCNI AATVSEITKP NSLSIDLLEE
301: VKAELCRLEE LKWSKMKELV LKKRSELEEI CRRTHIVLEE EDIAVENVIK AIESGDVNPE NILEQIEYRA GKVKEEALSR KEILEKADKW LNACEEENWL
401: EEYNQDENRY NAGKGSHLIL KRAEKARALV NKLPAMVEAL ASKITIWESE KEYEFLFDGN RLLSMLEEYT ELREEKEQER RRKRDLKKHQ GQVTSEQDKG
501: SVTKPQSAKK GLKVSTNKRF VSSPHTPQTD SPHSAKSNQS FSTPLSRHG

Arabidopsis Description

MAP65-965-kDa microtubule-associated protein 9 [Source:UniProtKB/Swiss-Prot;Acc:Q4PSA3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.