CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
golgi 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	golgi, nucleus
BaCelLo:	nucleus
MultiLoc:	golgi
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX89305	Canola	cytosol	82.63	96.13
CDY14300	Canola	nucleus	78.4	89.18
AT4G26760.1	Thale cress	cytosol	75.83	86.85
CDY19902	Canola	cytosol	67.67	76.58
CDY17313	Canola	cytosol	67.67	76.58
CDY20777	Canola	cytosol	64.95	73.01
CDY06596	Canola	cytosol	64.8	72.84
CDY36737	Canola	nucleus	69.03	72.54
KRH73815	Soybean	cytosol	63.14	71.82
KRH14311	Soybean	endoplasmic reticulum	63.44	71.19
CDY12006	Canola	cytosol	68.58	70.5
KRG98677	Soybean	cytosol	44.56	67.2
PGSC0003DMT400057428	Potato	cytosol	58.31	66.44
Solyc07g064970.2.1	Tomato	nucleus	58.31	66.44
KRH14315	Soybean	cytosol, endoplasmic reticulum	59.52	66.11
GSMUA_Achr3P13450_001	Banana	cytosol	58.61	65.87
PGSC0003DMT400033471	Potato	cytosol	56.65	65.33
GSMUA_Achr7P06200_001	Banana	cytosol	57.85	65.14
GSMUA_Achr4P19380_001	Banana	cytosol	57.55	65.02
GSMUA_Achr4P03890_001	Banana	cytosol	57.55	65.02
VIT_19s0090g01230.t01	Wine grape	endoplasmic reticulum	54.98	65.0
Solyc12g014490.1.1	Tomato	cytosol	55.44	64.73
CDX97365	Canola	nucleus	78.25	63.95
KRH46253	Soybean	nucleus	29.31	61.59
Os06t0308300-01	Rice	golgi	53.32	61.28
EER89674	Sorghum	cytosol	53.93	60.3
TraesCS7D01G224800.1	Wheat	cytosol	52.87	60.14
Os06t0611000-01	Rice	nucleus	52.72	60.07
TraesCS7B01G304900.2	Wheat	cytosol	52.57	60.0
TraesCS7D01G399400.1	Wheat	cytosol	52.42	59.83
HORVU7Hr1G094860.1	Barley	cytosol	52.11	59.48
TraesCS7A01G405500.1	Wheat	cytosol	51.81	59.14
TraesCS7A01G223100.1	Wheat	cytosol, nucleus, plastid	52.87	59.02
EER88641	Sorghum	cytosol	51.21	58.45
HORVU7Hr1G045770.7	Barley	endoplasmic reticulum	53.32	57.68
TraesCS7B01G190000.1	Wheat	endoplasmic reticulum, golgi	53.47	57.56
TraesCS6D01G263300.1	Wheat	cytosol	49.4	55.71
Os02t0720200-01	Rice	cytosol	49.55	55.69
Zm00001d037413_P002	Maize	cytosol	52.72	55.31
TraesCS6A01G282800.1	Wheat	cytosol	48.79	55.03
HORVU6Hr1G070900.6	Barley	cytosol	48.64	54.58
TraesCS6B01G311200.1	Wheat	cytosol	48.34	54.15
Zm00001d045864_P004	Maize	mitochondrion	52.57	51.4
CDX81663	Canola	cytosol	38.37	42.47
CDY17624	Canola	nucleus	38.67	42.11
CDY33748	Canola	cytosol	37.92	42.04
CDY00270	Canola	nucleus	33.69	41.37
CDX86911	Canola	nucleus	33.69	41.37
CDY03090	Canola	nucleus	37.92	40.42
CDX84899	Canola	extracellular, nucleus, plastid	34.89	40.24
CDY27637	Canola	cytosol	34.59	40.18
CDX93308	Canola	nucleus	35.5	39.9
CDY18372	Canola	nucleus	35.35	39.66
CDY16786	Canola	nucleus	32.48	39.59
CDX87240	Canola	nucleus	32.18	39.37
CDY15798	Canola	endoplasmic reticulum, golgi	24.32	38.15
CDY62713	Canola	cytosol	35.2	34.06
CDX89081	Canola	cytosol	34.29	33.09
CDY09401	Canola	endoplasmic reticulum, golgi, plasma membrane	19.18	22.32

Protein Annotations

EnsemblPlants:CDX94287	EnsemblPlantsGene:GSBRNA2T00157377001	Gene3D:1.20.58.1520	GO:A0A078DZC6	GO:GO:0000226	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0008017	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043
InterPro:MAP65_Ase1_PRC1	ncoils:Coil	PANTHER:PTHR19321	PANTHER:PTHR19321:SF15	PFAM:PF03999	ProteinID:CDX94287
ProteinID:CDX94287.1	SEG:seg	UniParc:UPI0004EF03FB	MapMan:13.4.3.6	:	:

Description

BnaC01g18970D

Coordinates

chrLK031881:+:13689..17042

Molecular Weight (calculated)

75074.0 Da

IEP (calculated)

5.513

GRAVY (calculated)

-0.558

Length

662 amino acids

Sequence
(BLAST)

001: MMVVEKRNRE LRGEREGMSK VREKKKKKKK RRSAYRRSTM QLDFCKVQCY KLCQSLRSPS LFELLWVLLK LGFELLKFQI LLLLIRNLCA FTRMAVTEAE
101: NPLLGEITCG TLLQKLQEIW DEVGESDEER DKLLLQIEED CLNVYKKKVE LAAKSRAELL QTLSDANVEL TNLIAALGDK SYIGIPDKTS GTIKEQLSAI
201: APALEQLWQQ KEERVREFSG VQSQIQKICE EIARGLSNGP LVVDESDLSL KRLDDYKSKL QELQKEKSDR LNKVLEFVST VHDLCAVLGL DFLSTVTEVH
301: PSLDEANGVQ NKSISNETLS TLAETVLTLK EDKNQRLKKL QELATQLTDL WNLMDTPDEE RELFDHVICN MSAPAHEVTV SGALALDLIE QAEVEVDRLD
401: KLKASRMKEI AFKKQTELEE IYARAHIEIK QEVVRERIMS LVDSGNTQPA ELLAQMDGEI AEAKEEAFSR KEILDRVEKW MSACEEESWL EDYNLDQNRY
501: SASRGAHLNL KRAEKARILV SKITAMVDTL VAKTRAWEDD KSMSFEYDGV PLLAMLDEYT ILRQEREEEK RRQKEQKKQQ EQPHTDQDTS AFGSKPSPAR
601: PVSAKKPVGT RANGGGSNET PIKRLSMNGS KSKRDSLNKL TSPSNLGAVS KEDAASPVVA SP

Best Arabidopsis Sequence Match ( AT4G26760.1 )
(BLAST)

001: MAVTEAENPL LGEITCGTLL QKLQEIWDEV GESDEERDKL LLQIEEECLN VYKKKVELAA KSRAELLQTL SDATVELSNL TTALGEKSYI DIPDKTSGTI
101: KEQLSAIAPA LEQLWQQKEE RVRAFSDVQS QIQKICEEIA GGLNNGPHVV DETDLSLKRL DDFQRKLQEL QKEKSDRLQK VLEFVSTVHD LCAVLRLDFL
201: STVTEVHPSL DEANGVQTKS ISNETLARLA KTVLTLKEDK MQRLKKLQEL ATQLTDLWNL MDTSDEEREL FDHVTSNISA SVHEVTASGA LALDLIEQAE
301: VEVDRLDQLK SSRMKEIAFK KQSELEEIYA RAHIEIKPEV VRERIMSLID AGNTEPTELL ADMDSQIAKA KEEAFSRKEI LDRVEKWMSA CEEESWLEDY
401: NRDQNRYSAS RGAHLNLKRA EKARILVSKI TAMVDTLIAK TRAWEEENSM SFEYDGVPLL AMLDEYTMLR QEREDEKRRL KEQKKQQEQP HTDQESAFGS
501: KPSPARPVSA KKPVGTRVNG GGLNETPMRR LSMNSNQNGS KSKRDSLNKI ASPSNIVANT KDDAASPVSR ADPVMASP

Arabidopsis Description

MAP65-2MAP65-2 [Source:UniProtKB/TrEMBL;Acc:A0A178V4W3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.