Factsheet for VIT_19s0090g01230.t01

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 2
extracellular 4
endoplasmic reticulum 5
vacuole 4
plasma membrane 4
golgi 4
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH73815	Soybean	cytosol	81.07	78.01
KRH14311	Soybean	endoplasmic reticulum	80.71	76.61
PGSC0003DMT400057428	Potato	cytosol	77.5	74.7
Solyc07g064970.2.1	Tomato	nucleus	77.14	74.35
PGSC0003DMT400033471	Potato	cytosol	75.18	73.34
KRH14315	Soybean	cytosol, endoplasmic reticulum	76.43	71.81
Solyc12g014490.1.1	Tomato	cytosol	72.5	71.6
GSMUA_Achr7P06200_001	Banana	cytosol	74.46	70.92
GSMUA_Achr4P19380_001	Banana	cytosol	73.93	70.65
GSMUA_Achr3P13450_001	Banana	cytosol	73.75	70.12
Bra028986.1-P	Field mustard	cytosol	73.21	69.73
GSMUA_Achr4P03890_001	Banana	cytosol	72.32	69.11
Bra002922.1-P	Field mustard	cytosol	71.96	68.89
CDY17313	Canola	cytosol	71.96	68.89
CDY19902	Canola	cytosol	71.96	68.89
AT5G55230.2	Thale cress	cytosol	74.64	67.86
AT4G26760.1	Thale cress	cytosol	69.11	66.95
Bra035564.1-P	Field mustard	cytosol	70.0	66.78
CDY20777	Canola	cytosol	70.0	66.55
CDY14300	Canola	nucleus	69.11	66.49
Bra010428.1-P	Field mustard	cytosol	68.93	66.32
CDY06596	Canola	cytosol	69.64	66.21
KRG98677	Soybean	cytosol	51.43	65.6
CDX89305	Canola	cytosol	66.61	65.55
Bra026405.1-P	Field mustard	cytosol	66.43	65.38
CDY36737	Canola	nucleus	73.04	64.92
CDY12006	Canola	cytosol	73.04	63.51
Os06t0611000-01	Rice	nucleus	65.36	62.99
TraesCS7D01G399400.1	Wheat	cytosol	65.18	62.93
KRH46253	Soybean	nucleus	35.36	62.86
TraesCS7B01G304900.2	Wheat	cytosol	65.0	62.76
Os06t0308300-01	Rice	golgi	64.46	62.67
HORVU7Hr1G094860.1	Barley	cytosol	64.82	62.59
TraesCS7A01G405500.1	Wheat	cytosol	64.64	62.41
EER89674	Sorghum	cytosol	64.46	60.98
TraesCS7D01G224800.1	Wheat	cytosol	63.04	60.65
EER88641	Sorghum	cytosol	62.68	60.52
TraesCS7A01G223100.1	Wheat	cytosol, nucleus, plastid	63.21	59.7
HORVU7Hr1G045770.7	Barley	endoplasmic reticulum	63.21	57.84
TraesCS7B01G190000.1	Wheat	endoplasmic reticulum, golgi	63.21	57.56
HORVU6Hr1G070900.6	Barley	cytosol	60.0	56.95
TraesCS6D01G263300.1	Wheat	cytosol	59.64	56.9
TraesCS6A01G282800.1	Wheat	cytosol	59.11	56.39
TraesCS6B01G311200.1	Wheat	cytosol	59.46	56.35
Zm00001d037413_P002	Maize	cytosol	63.21	56.1
Os02t0720200-01	Rice	cytosol	58.57	55.69
CDX94287	Canola	nucleus	65.0	54.98
Zm00001d045864_P004	Maize	mitochondrion	63.39	52.44
VIT_13s0084g00080.t01	Wine grape	cytosol, nucleus, plastid	50.54	50.36
CDX97365	Canola	nucleus	68.57	47.41
VIT_01s0010g03540.t01	Wine grape	cytosol	47.68	47.09
VIT_01s0011g06330.t01	Wine grape	nucleus	47.86	44.74
VIT_15s0048g00860.t01	Wine grape	cytosol, nucleus, plasma membrane	42.14	39.4
VIT_16s0022g01820.t01	Wine grape	nucleus	48.04	36.85

Protein Annotations

Gene3D:1.20.58.1520	MapMan:13.4.3.6	ProteinID:CCB50696	ProteinID:CCB50696.1	ncoils:Coil	UniProt:F6HET4
EMBL:FN595751	GO:GO:0000226	GO:GO:0000910	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0007049	GO:GO:0008017	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	InterPro:MAP65_Ase1_PRC1
PFAM:PF03999	PANTHER:PTHR19321	PANTHER:PTHR19321:SF15	SignalP:SignalP-noTM	UniParc:UPI000210A136	ArrayExpress:VIT_19s0090g01230
EnsemblPlantsGene:VIT_19s0090g01230	EnsemblPlants:VIT_19s0090g01230.t01	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr19:+:7284241..7293153

Molecular Weight (calculated)

63085.0 Da

IEP (calculated)

4.862

GRAVY (calculated)

-0.508

Length

560 amino acids

Sequence
(BLAST)

001: MTMTHWPKIL FCFSLPNVSL MRGICPPFCH QQIWDEVGES DEERDKMLLQ LEQECLDVYK RKVDQAVKSR AHLLQALADA QLELSRLLSA LGEKSFVGIP
101: DKTSGTIKEQ LAAIAPTLEQ LWKQKEERVK EFSDVQTQIQ KICGEIAGNS NLSEVPVVDE ADLSLKKLDE FQGQLQELQK EKSDRLHKVL EFVSTVHDLC
201: AVLGMDFFNT VTEVHPSLND STGVQSKSIS NDTLSRLAKT VLALKEDKKQ RLQKLQELAT QLIDLWNLMD TPEEERSLFD HVTCNISASV DEVTIPGALA
301: LDLIEQAEVE VERLDQLKAS RMKEIAFKRQ AELEEIFARA HIEIDPEAAR AKIMSLIDSG DVEPSELLAD MDNQITKAKE EAFSRKDILD KVEKWMSACE
401: EESWLEDYNR LLLTHWLPKT GAWEEDHGIP FTYDGVPLLA MLDEYAMLRH DREEEKRRMR DQKKFHELLN TEQEAIFGSR PSPGRPLGPK KVVGPRANGG
501: ANGTPSRRLS LNANQNGARS TSKDGKRDNT RPVAPVNYVA ISKEDAASHV SGTEPVPASP

Best Arabidopsis Sequence Match ( AT5G55230.1 )
(BLAST)

001: MAVTDTESPH LGEITCGTLL EKLQEIWDEV GESDDERDKL LLQIEQECLD VYKRKVEQAA KSRAELLQTL SDANAELSSL TMSLGDKSLV GIPDKSSGTI
101: KEQLAAIAPA LEQLWQQKEE RVREFSDVQS QIQKICGDIA GGLSNEVPIV DESDLSLKKL DDFQSQLQEL QKEKSDRLRK VLEFVSTVHD LCAVLGLDFL
201: STVTEVHPSL DEDTSVQSKS ISNETLSRLA KTVLTLKDDK KQRLQKLQEL ATQLIDLWNL MDTPDEEREL FDHVTCNISS SVDEVTVPGA LARDLIEQAE
301: VEVDRLDQLK ASRMKEIAFK KQSELEEIYA RAHVEVNPES ARERIMSLID SGNVEPTELL ADMDSQISKA KEEAFSRKDI LDRVEKWMSA CEEESWLEDY
401: NRDQNRYSAS RGAHLNLKRA EKARILVSKI PAMVDTLVAK TRAWEEEHSM SFAYDGVPLL AMLDEYGMLR QEREEEKRRL REQKKVQEQP HVEQESAFST
501: RPSPARPVSA KKTVGPRANN GGANGTHNRR LSLNANQNGS RSTAKEAGRR ETLNRPAAPT NYVAISKEEA ASSPVSGAAD HQVPASP

Arabidopsis Description

ATMAP65-1Microtubule-associated proteins 65-1 [Source:UniProtKB/TrEMBL;Acc:F4K3E4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.