Factsheet for VIT_01s0011g06330.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH40910	Soybean	cytosol, mitochondrion, nucleus	75.46	75.21
KRG89099	Soybean	cytosol	75.29	75.04
CDY17624	Canola	nucleus	72.29	71.22
Bra024843.1-P	Field mustard	nucleus	72.12	71.05
AT2G01910.1	Thale cress	nucleus	71.62	70.56
PGSC0003DMT400075869	Potato	nucleus	70.45	70.45
Solyc04g008290.2.1	Tomato	nucleus	70.28	70.17
PGSC0003DMT400058659	Potato	cytosol, plastid	69.45	69.22
Solyc01g005080.2.1	Tomato	cytosol	64.27	68.87
CDY33748	Canola	cytosol	68.61	68.84
Bra026811.1-P	Field mustard	cytosol, nucleus, plastid	68.28	68.74
CDX81663	Canola	cytosol	68.61	68.73
KRH46955	Soybean	cytosol	32.39	68.55
CDY03090	Canola	nucleus	70.28	67.79
AT1G14690.1	Thale cress	cytosol	67.95	67.5
KRH01846	Soybean	extracellular	38.9	67.34
KRH09582	Soybean	cytosol, mitochondrion, nucleus	16.69	66.23
GSMUA_Achr6P23030_001	Banana	cytosol	61.94	66.01
CDY15798	Canola	endoplasmic reticulum, golgi	46.24	65.64
GSMUA_Achr10P...	Banana	nucleus	64.77	64.24
EER98994	Sorghum	nucleus	60.77	61.07
Os09t0450300-01	Rice	nucleus	59.6	60.0
TraesCS5D01G240800.1	Wheat	nucleus	58.43	59.42
GSMUA_Achr6P04350_001	Banana	cytosol	62.1	59.05
TraesCS4A01G074200.2	Wheat	nucleus	60.1	58.92
TraesCS5A01G233900.1	Wheat	nucleus	57.43	58.7
TraesCS5B01G232400.1	Wheat	nucleus	57.6	58.57
Os03t0237600-04	Rice	nucleus	59.6	58.52
TraesCS4B01G230500.2	Wheat	nucleus	59.6	58.43
TraesCS4D01G231800.3	Wheat	nucleus	59.6	58.43
EER92583	Sorghum	cytosol	59.1	57.94
GSMUA_Achr6P05980_001	Banana	cytosol	57.1	57.48
Zm00001d028363_P001	Maize	cytosol	58.43	57.28
Zm00001d020685_P002	Maize	cytosol	61.1	56.92
HORVU4Hr1G064580.2	Barley	endoplasmic reticulum, nucleus, plastid	59.1	49.03
Os03t0719000-01	Rice	cytosol, nucleus	37.73	47.88
VIT_19s0090g01230.t01	Wine grape	endoplasmic reticulum	44.74	47.86
TraesCS4D01G051300.1	Wheat	cytosol	47.08	47.72
TraesCS4A01G263800.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	48.75	47.1
TraesCS4B01G051200.1	Wheat	nucleus	48.41	46.93
EER90980	Sorghum	cytosol	49.58	46.92
VIT_13s0084g00080.t01	Wine grape	cytosol, nucleus, plastid	42.9	45.73
VIT_01s0010g03540.t01	Wine grape	cytosol	39.73	41.98
HORVU4Hr1G008440.3	Barley	nucleus	48.91	41.44
VIT_15s0048g00860.t01	Wine grape	cytosol, nucleus, plasma membrane	39.9	39.9
Bra026625.1-P	Field mustard	mitochondrion	25.38	39.58
GSMUA_Achr2P21660_001	Banana	endoplasmic reticulum, extracellular	61.1	38.61
VIT_16s0022g01820.t01	Wine grape	nucleus	45.91	37.67
CDY09401	Canola	endoplasmic reticulum, golgi, plasma membrane	29.05	30.58
Zm00001d033794_P001	Maize	nucleus	48.91	29.01

Protein Annotations

Gene3D:1.20.58.1520	EntrezGene:100264632	wikigene:100264632	MapMan:35.1	EMBL:AM481723	ProteinID:CAN64202
ProteinID:CAN64202.1	ProteinID:CBI26778	ProteinID:CBI26778.3	ncoils:Coil	UniProt:D7T8F7	EMBL:FN595752
GO:GO:0000226	GO:GO:0000910	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0007049
GO:GO:0008017	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	EntrezGene:LOC100264632	wikigene:LOC100264632
InterPro:MAP65_Ase1_PRC1	PFAM:PF03999	PANTHER:PTHR19321	PANTHER:PTHR19321:SF5	TIGR:TC69687	UniParc:UPI0001982943
ArrayExpress:VIT_01s0011g06330	EnsemblPlantsGene:VIT_01s0011g06330	EnsemblPlants:VIT_01s0011g06330.t01	unigene:Vvi.23798	RefSeq:XP_002281677	RefSeq:XP_002281677.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr1:+:6130318..6135868

Molecular Weight (calculated)

67911.2 Da

IEP (calculated)

7.565

GRAVY (calculated)

-0.646

Length

599 amino acids

Sequence
(BLAST)

001: MLALGSPTSV RTSTTCGALL RELEQIWNDI GESEAEKDRM LLELERECLE VYRRKVSEAG NTKARLHQSV MAKEAELAAL MAALGELGFH SQTHMEKRST
101: SLKEQLASVT PLVEDLRSKK EERLKQFADI RAQIEKISGE ISGYNHHTNT MIGCLTLEEQ DLSLRNLNEC QTHLRTLQKE KSERLNKVLE YVNEVHTLCG
201: VLGLDFGQTV SDVHPSLHGT SLEQSTNISN STLEGLEHAI LKLKTERKGR ILKLKNIGAS LLELWKLMDT PKEDKSDFLR ITSFLGTSEL EVTEPDVLST
301: EMIEQASAEV ERLGKLKASR MKELVMKKRA ELEEICRIAH IEPDTNTAAE KSNALIDSGL VDPSELLANI EAQITKVKEE AVNRKEIMDR IDRWLSACEE
401: ENWLEDYNRD ENRYSAGRGA HINLKRAERA RVTISKIPAI VDNLISRTLA WEKEKRMSFL YDGVSLVRIL EDYKEARRQK EEEKKRYRDQ KKLQDLLLTE
501: KEAMYGSKPS PKRTNSFRKP NGYRANGNGS MTPTPRRNSV GGATPELLTP RSYSGRQNGY FKEMRRLSTA PLNFVAISKE DTMSYASICG SELGSPPRR

Best Arabidopsis Sequence Match ( AT2G01910.1 )
(BLAST)

001: MLEIGSPNAL FFRTNTTCNN LLRELQKIWV EIGETETEKD RMLMELEREC LQIYQRKVDE AANSKAKLHQ SVASIEAEVA SLMAALGVLN INSPIKLDKG
101: SKSLKEKLAA VTPLVEELRI QKEERMKQFS DIKAQIEKIS GEISGYSDHL NKAMNISLTL EEQDLTLRNL NEYQTHLRTL QKEKSDRLNK VLGYVNEVHA
201: LCGVLGVDFS QTVSAVHPSL HRTDQEQSTN ISDSTLEGLE HMIQKLKTER KSRFQKLKDV VASLFELWNL MDTPQEDRTK FGKVTYVVRS SEANITEPGI
301: LSTETIEQVS TEVDSLSKLK ASRMKELVMK RRSELEDLCR LTHIQPDTST SAEKSTALID SGLVDPSELL ANIEMQINKI KDEAQSRKDI MDRIDRWLSA
401: CEEENWLEEY NLDENRYSAG RGGHVNLKRA ERARVTINKI PGMVDTLIKK TLVWEEDMQK SFLYDGVRLV NILEDYKLTR KQQEEEKKRY RDQKKRQDLL
501: LTQRESIYGS KPSPRRSSSF RKPNGFNISN GNGSVPPTPR RGSVGTTTPD VLLTPRSYSG HHRQNGYFKE VRRLSTTPLN YVAMQKEDTV STTYTSIYSS
601: EPDSPLQG

Arabidopsis Description

MAP65-665-kDa microtubule-associated protein 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9SIS3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.