CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY17624	Canola	nucleus	92.91	94.9
AT2G01910.1	Thale cress	nucleus	86.63	88.49
CDY15798	Canola	endoplasmic reticulum, golgi	55.72	81.99
CDX81663	Canola	cytosol	75.2	78.09
CDY33748	Canola	cytosol	74.07	77.05
VIT_01s0011g06330.t01	Wine grape	nucleus	67.79	70.28
KRH40910	Soybean	cytosol, mitochondrion, nucleus	64.25	66.39
KRG89099	Soybean	cytosol	64.25	66.39
Solyc04g008290.2.1	Tomato	nucleus	62.8	65.0
PGSC0003DMT400075869	Potato	nucleus	62.64	64.94
KRH09582	Soybean	cytosol, mitochondrion, nucleus	15.78	64.9
Solyc01g005080.2.1	Tomato	cytosol	57.65	64.04
KRH46955	Soybean	cytosol	28.82	63.25
PGSC0003DMT400058659	Potato	cytosol, plastid	61.03	63.06
GSMUA_Achr6P23030_001	Banana	cytosol	55.56	61.39
KRH01846	Soybean	extracellular	33.82	60.69
GSMUA_Achr10P...	Banana	nucleus	56.36	57.95
Os09t0450300-01	Rice	nucleus	54.59	56.97
EER98994	Sorghum	nucleus	54.11	56.38
TraesCS5D01G240800.1	Wheat	nucleus	52.98	55.86
TraesCS5A01G233900.1	Wheat	nucleus	52.33	55.46
TraesCS5B01G232400.1	Wheat	nucleus	52.33	55.18
GSMUA_Achr6P04350_001	Banana	cytosol	55.88	55.08
TraesCS4A01G074200.2	Wheat	nucleus	53.95	54.83
TraesCS4D01G231800.3	Wheat	nucleus	53.78	54.66
TraesCS4B01G230500.2	Wheat	nucleus	53.62	54.5
Os03t0237600-04	Rice	nucleus	52.33	53.28
GSMUA_Achr6P05980_001	Banana	cytosol	51.05	53.28
EER92583	Sorghum	cytosol	52.01	52.86
Zm00001d020685_P002	Maize	cytosol	54.43	52.57
Zm00001d028363_P001	Maize	cytosol	51.69	52.54
Os03t0719000-01	Rice	cytosol, nucleus	36.88	48.52
TraesCS4A01G263800.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	46.22	46.29
TraesCS4B01G051200.1	Wheat	nucleus	46.05	46.28
TraesCS4D01G051300.1	Wheat	cytosol	43.8	46.02
HORVU4Hr1G064580.2	Barley	endoplasmic reticulum, nucleus, plastid	53.46	45.98
EER90980	Sorghum	cytosol	46.22	45.34
CDY17313	Canola	cytosol	42.67	45.3
CDY19902	Canola	cytosol	42.67	45.3
CDX89305	Canola	cytosol	41.38	45.17
CDY14300	Canola	nucleus	41.06	43.81
CDY20777	Canola	cytosol	41.55	43.8
CDY06596	Canola	cytosol	41.22	43.46
CDY36737	Canola	nucleus	42.67	42.06
CDY12006	Canola	cytosol	42.19	40.68
HORVU4Hr1G008440.3	Barley	nucleus	46.05	40.45
CDY09401	Canola	endoplasmic reticulum, golgi, plasma membrane	36.39	39.72
CDX86911	Canola	nucleus	34.46	39.7
CDY00270	Canola	nucleus	34.3	39.52
CDY18372	Canola	nucleus	37.52	39.49
CDX93308	Canola	nucleus	37.2	39.22
CDX87240	Canola	nucleus	33.33	38.26
CDX94287	Canola	nucleus	40.42	37.92
CDY16786	Canola	nucleus	32.85	37.57
CDX84899	Canola	extracellular, nucleus, plastid	33.49	36.24
CDY27637	Canola	cytosol	32.85	35.79
CDX89081	Canola	cytosol	38.81	35.13
CDY62713	Canola	cytosol	38.49	34.94
GSMUA_Achr2P21660_001	Banana	endoplasmic reticulum, extracellular	52.98	34.7
CDX97365	Canola	nucleus	41.38	31.73
Zm00001d033794_P001	Maize	nucleus	45.57	28.02

Protein Annotations

EnsemblPlants:CDY03090	EnsemblPlantsGene:GSBRNA2T00115439001	Gene3D:1.20.58.1520	GO:A0A078EM88	GO:GO:0000226	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0008017	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043
InterPro:MAP65_Ase1_PRC1	ncoils:Coil	PANTHER:PTHR19321	PANTHER:PTHR19321:SF5	PFAM:PF03999	ProteinID:CDY03090
ProteinID:CDY03090.1	SEG:seg	UniParc:UPI0004EEE934	MapMan:35.1	:	:

Description

BnaC07g21370D

Coordinates

chrLK031939:-:996293..1000059

Molecular Weight (calculated)

71504.5 Da

IEP (calculated)

8.575

GRAVY (calculated)

-0.683

Length

621 amino acids

Sequence
(BLAST)

001: MLEVGNFNAL FFQTNTTCNN LLRELQQIWV EIGESEAEKD KMLMELEKEC LQIYQRKVDE AANSKARLHQ SVAAIEAEVA SLMAALGVLN INSPTKVDKS
101: SKSLKEKLAA VTPLVEELRI QKEERMKQFS DIKAQIEKIS GEISGYSEHL NKGMISSLTL EEQDLTLRKL NEYQTHLRTL QKEKSDRLNK VLGYVNEVHT
201: LCGVLGVDFS QTVCEVHPSL HRTDHEQSTN ISDNTLEGLD NMIQKLKTER RARFQKLKDV VASLFELWNL MDTPQEERTK FGRVTYVVRS SESNITEPGI
301: LSTETIEQVS AEVESLSKLK ASKMKELVMK RRSELEDLCR ITHIQPDTST SAEKSSALID SGLVDPSELL ANIEMQINKI KDEAQSRKDI MDRIDRWLSA
401: CEEENWLEEY NLDENRYSAG RGGHVNLKRA ERARVTINKI PAMVDNLIKK TLVWEEETQK SFLYDGVRLV NILEDYKLTR KQQEEEKKRY RDQKKRQDLL
501: LTQRESIYGS KPSPRRSSSF RKPNGYSISN GNGSMPPTPR RSSVGTTTPD LLLTPRSYSG HHRQNGYFKE VRRLTSTPLN YRLMFRSWIY VVKDLWSNLN
601: NDVTVKKKSV MGMKMQTCEY R

Best Arabidopsis Sequence Match ( AT2G01910.1 )
(BLAST)

001: MLEIGSPNAL FFRTNTTCNN LLRELQKIWV EIGETETEKD RMLMELEREC LQIYQRKVDE AANSKAKLHQ SVASIEAEVA SLMAALGVLN INSPIKLDKG
101: SKSLKEKLAA VTPLVEELRI QKEERMKQFS DIKAQIEKIS GEISGYSDHL NKAMNISLTL EEQDLTLRNL NEYQTHLRTL QKEKSDRLNK VLGYVNEVHA
201: LCGVLGVDFS QTVSAVHPSL HRTDQEQSTN ISDSTLEGLE HMIQKLKTER KSRFQKLKDV VASLFELWNL MDTPQEDRTK FGKVTYVVRS SEANITEPGI
301: LSTETIEQVS TEVDSLSKLK ASRMKELVMK RRSELEDLCR LTHIQPDTST SAEKSTALID SGLVDPSELL ANIEMQINKI KDEAQSRKDI MDRIDRWLSA
401: CEEENWLEEY NLDENRYSAG RGGHVNLKRA ERARVTINKI PGMVDTLIKK TLVWEEDMQK SFLYDGVRLV NILEDYKLTR KQQEEEKKRY RDQKKRQDLL
501: LTQRESIYGS KPSPRRSSSF RKPNGFNISN GNGSVPPTPR RGSVGTTTPD VLLTPRSYSG HHRQNGYFKE VRRLSTTPLN YVAMQKEDTV STTYTSIYSS
601: EPDSPLQG

Arabidopsis Description

MAP65-665-kDa microtubule-associated protein 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9SIS3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.