CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, extracellular, nucleus

Predictor Summary:

plastid 2
mitochondrion 2
extracellular 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY27637	Canola	cytosol	97.21	97.89
Bra032853.1-P	Field mustard	cytosol	93.38	88.74
AT1G27920.1	Thale cress	nucleus	85.54	87.37
KRG97427	Soybean	cytosol	62.37	64.97
VIT_01s0010g03540.t01	Wine grape	cytosol	60.8	61.55
KRH31473	Soybean	cytosol	62.89	60.77
Solyc05g015320.2.1	Tomato	extracellular	61.32	59.16
PGSC0003DMT400074853	Potato	cytosol	60.8	58.66
GSMUA_Achr11P...	Banana	nucleus	52.61	52.52
Os08t0531100-01	Rice	cytosol	43.9	51.64
Zm00001d031619_P001	Maize	nucleus	48.95	47.55
EES15312	Sorghum	cytosol	48.78	47.38
TraesCS7B01G158100.1	Wheat	cytosol, mitochondrion, nucleus	47.39	46.1
TraesCS7A01G260100.2	Wheat	nucleus	47.21	45.93
TraesCS7D01G261100.1	Wheat	nucleus	47.21	45.93
CDX89305	Canola	cytosol	40.94	41.3
CDY20777	Canola	cytosol	41.81	40.75
CDY17313	Canola	cytosol	41.46	40.68
CDY19902	Canola	cytosol	41.46	40.68
HORVU7Hr1G054130.4	Barley	mitochondrion	47.04	40.6
CDY14300	Canola	nucleus	40.59	40.03
CDY06596	Canola	cytosol	40.94	39.9
CDY36737	Canola	nucleus	41.64	37.94
Zm00001d049816_P001	Maize	nucleus	17.94	37.73
CDY12006	Canola	cytosol	41.46	36.96
CDY18372	Canola	nucleus	36.06	35.08
CDX94287	Canola	nucleus	40.24	34.89
CDX93308	Canola	nucleus	35.71	34.8
CDX87240	Canola	nucleus	32.75	34.75
CDX81663	Canola	cytosol	35.89	34.45
CDY33748	Canola	cytosol	35.54	34.17
CDY16786	Canola	nucleus	32.23	34.07
CDY17624	Canola	nucleus	36.06	34.05
CDY00270	Canola	nucleus	31.88	33.95
CDX86911	Canola	nucleus	31.88	33.95
CDY03090	Canola	nucleus	36.24	33.49
CDY15798	Canola	endoplasmic reticulum, golgi	21.95	29.86
CDX97365	Canola	nucleus	40.42	28.64
CDX89081	Canola	cytosol	31.88	26.68
CDY62713	Canola	cytosol	31.01	26.02
CDY09401	Canola	endoplasmic reticulum, golgi, plasma membrane	18.82	18.98

Protein Annotations

EnsemblPlants:CDX84899	EnsemblPlantsGene:GSBRNA2T00142224001	Gene3D:1.20.58.1520	GO:A0A078D9F1	GO:GO:0000226	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0008017	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043
InterPro:MAP65_Ase1_PRC1	ncoils:Coil	PANTHER:PTHR19321	PANTHER:PTHR19321:SF3	PFAM:PF03999	ProteinID:CDX84899
ProteinID:CDX84899.1	SEG:seg	UniParc:UPI0004EDD472	MapMan:35.1	:	:

Description

BnaC05g21560D

Coordinates

chrLK031839:-:11584..14912

Molecular Weight (calculated)

66180.9 Da

IEP (calculated)

6.799

GRAVY (calculated)

-0.696

Length

574 amino acids

Sequence
(BLAST)

001: MGSLQTPIGM RSSSLLDMSC GYLLKELQAR CSLFCTQMIW DEVGEDKFER EKVLLDIEQE CVEAYRRKVD HANISRSRLH QELAESEAEL THLLLCLGER
101: SVPGRPEKKE GTLREQLDAI APALREMRLR KDERVKQVRS VKGEIQKISA EIAGRSTYEE SSTNIKIDDN DLSIKKLEEY QNELHRLHDE KNERLQKVEI
201: YICAIRDLSA TMETEASMII TKIHPSLNDL YGISKNISDD ILKKLNGTVV SLEEEKQNRL EKIHHLGRAL SNLWNLMDAS YEDRQKFSHV IELLSFEPSD
301: VCAPGSITSG IIQQAEAEVK RLDQLKASKT KELFLKKQKE LETTCNISHM ETPSTEVGDI INLVDSGEID HVELLNAMDE KIARAKEEAA SRKVIIEKVD
401: RWMLARDEER WLEEYDQDEN RYSVSRNAHR NLRRAERARK EVSKITGRLV ESILVKTKSW EEERQKVFLY NEEPLVAMLQ EYSNLRQEKE VEKLRLREKK
501: KIIPPPVAQQ DNFYVARPAS SNRRISNRSI NGGYGSASPL NRKLSRGFNN NTNYTALGTS LRRESSVIIK NTWP

Best Arabidopsis Sequence Match ( AT1G27920.1 )
(BLAST)

001: MGSLQTPIEM RSSSLLDTSC GYLLRELQMI WDEVGEDKFE REKVLLDIEQ ECVEAYRRKV DHANVSRSRL HQELAESEAE LTHFLLCLGE RSVPGRPEKK
101: GGTLREQLDS IAPALREMRL RKDERVKQFR SVKGEIQKIS AEIAGRSTYE DSTRKITIDD NDLSNKKLEE YQNELHRLHD EKNERLQKVD IYICAIRDLS
201: ATLGTEASMI ITKIHPSLND LYGISKNISD DILKKLNGTV VSLEEEKHKR LEKLHHLGRA LSNLWNLMDA SYEDRQKFFH VIDLLSSAPS DVCAPGSITL
301: DIIQQAEAEV KRLDQLKASR IKELFIKKQK ELEDTCNMSH METPSTEMGN ITNLVDSGEV DHVDLLAAMD EKIARAKEEA ASRKGIIEKV DRWMLASDEE
401: RWLEEYDQDE NRYSVSRNAH RNLRRAERAR ITVSKISGLV ESILVKAKSW EVERQKVFLY NEVPLVAMLQ EYNKLRQEKE MEKQRLREMK KMSIPQPVAE
501: GDNFYMARPA SSNRRISNRS MNGGFGSGSP INRKYSGGFN NTNNNYTALG TSIRRESRKS EA

Arabidopsis Description

MAP65-865-kDa microtubule-associated protein 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9C7G0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.