CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY18372	Canola	nucleus	89.98	89.83
AT2G38720.1	Thale cress	nucleus	76.23	81.64
VIT_13s0084g00080.t01	Wine grape	cytosol, nucleus, plastid	55.01	57.65
Solyc01g096680.2.1	Tomato	nucleus	52.12	53.95
KRH20613	Soybean	cytosol	51.61	53.62
PGSC0003DMT400008510	Potato	plastid	44.99	52.89
GSMUA_Achr9P17360_001	Banana	cytosol	50.08	50.77
KXG21994	Sorghum	cytosol	44.65	45.98
TraesCS1D01G256000.1	Wheat	cytosol	41.94	45.91
TraesCS1B01G267200.2	Wheat	cytosol	44.31	45.31
TraesCS1A01G256800.1	Wheat	nucleus	44.14	45.14
Os05t0409400-01	Rice	cytosol, nucleus, plastid	46.01	44.87
Zm00001d038174_P002	Maize	cytosol	45.16	43.39
CDX89305	Canola	cytosol	40.24	41.65
CDY19902	Canola	cytosol	40.92	41.2
CDY17313	Canola	cytosol	40.92	41.2
CDY06596	Canola	cytosol	41.09	41.09
CDY14300	Canola	nucleus	40.41	40.89
CDY20777	Canola	cytosol	40.75	40.75
HORVU1Hr1G063330.5	Barley	golgi	43.8	40.69
CDY36737	Canola	nucleus	41.6	38.89
CDY17624	Canola	nucleus	40.07	38.82
CDY33748	Canola	cytosol	39.05	38.53
CDX81663	Canola	cytosol	38.71	38.13
CDY12006	Canola	cytosol	41.43	37.89
CDY03090	Canola	nucleus	39.22	37.2
CDX86911	Canola	nucleus	33.62	36.73
CDY00270	Canola	nucleus	33.28	36.36
CDY27637	Canola	cytosol	34.8	35.96
CDY16786	Canola	nucleus	33.11	35.91
CDX84899	Canola	extracellular, nucleus, plastid	34.8	35.71
CDX87240	Canola	nucleus	32.77	35.67
Zm00001d007926_P001	Maize	cytosol	9.68	35.62
CDY15798	Canola	endoplasmic reticulum, golgi	25.47	35.55
CDX94287	Canola	nucleus	39.9	35.5
Zm00001d004213_P001	Maize	cytosol	9.0	35.1
Zm00001d003920_P001	Maize	cytosol	7.64	32.61
CDY62713	Canola	cytosol	35.14	30.26
CDX89081	Canola	cytosol	35.14	30.17
CDX97365	Canola	nucleus	40.24	29.26
CDY09401	Canola	endoplasmic reticulum, golgi, plasma membrane	20.03	20.74

Protein Annotations

EnsemblPlants:CDX93308	EnsemblPlantsGene:GSBRNA2T00155280001	GO:A0A078E143	GO:GO:0000226	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0008017	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	InterPro:MAP65_Ase1_PRC1
ncoils:Coil	PANTHER:PTHR19321	PANTHER:PTHR19321:SF4	PFAM:PF03999	ProteinID:CDX93308	ProteinID:CDX93308.1
SEG:seg	UniParc:UPI0004EE2639	MapMan:35.1	:	:	:

Description

BnaC04g45880D

Coordinates

chrLK031875:-:865331..868437

Molecular Weight (calculated)

66704.9 Da

IEP (calculated)

6.947

GRAVY (calculated)

-0.599

Length

589 amino acids

Sequence
(BLAST)

001: MSLSSTTNTT TCTSLLQELQ IIWDEIGEGY SERDEMLLEL EQECLDIYNK KVDKTRKHRA ELQRSLAQSE AEIATLMSAL GEQASFSKKE GSLKEQISSV
101: KPVLEELMVK KDLRWRQVSE IVTQIAEISC NIAGNDSPLS SGLEVDGSDL TKRKLDELRA HLQDLRNEKA VRLKKVNSYI SAVHELSEIL SFDFSKALGN
201: VHKSLTGASK SISNDTLARL TELVESLKKE KRQRLLKLQG LGRTMQELWS LMETTTDERR RFDNLSVLLS VQADDALGKG CLGLDIVREA EDEVKRLNAL
301: KSSKMKELVL KRHYELEEIC REVHMDFNSD AARQSLIDVI DSGDADLSDI LESLDEQIEK AKEEASSRKE ILDKVEKLKH AKEEEKWLDD YEKDENRFSA
401: VRGAHKNLKR AEKARSLISK IPGESFYTCT TWLMQVSLTS LMLIQKPVVK LIGLKMTLTS SMIDGLTTRV KAWEKERGVP FLCDKLPLLQ TLEEEIVLRA
501: QREEEKRQFR EQKRLQGQLA TEKEAKYGSK SAKKKPLGQS LNTDNVTKTP LGRRVGTTPG RSGVKDYRES GRGNATAIPL NYVALQKED

Best Arabidopsis Sequence Match ( AT2G38720.1 )
(BLAST)

001: MSPSSTTTCT SLLEELQMIW DEIGESYNER DKMLLELEQE CLDIYNKKVE KTRKFRAELQ RSLAQAEAEI ASLMSALGEK VSFAKKEGSL KEQISSVKPV
101: LEDLLMKKDR RRKELSETLN QIAEITSNIA GNDYTVSSGS EVDESDLTQR KLDELRADLQ DLRNEKAVRL QKVNSYISAV HELSEILSFD FSKALNSVHS
201: SLTEFSKTHS KSISNDTLAR FTELVKSLKA EKHERLLKLQ GLGRSMQELW NLMETPMDER RRFDHCSSLL SSLPDDALKK GCLSLDIIRE AEDEVRRLNS
301: LKSSKMKELV FKRQCELEEI CRGNHMDINS DAARKSLVEL IESGDGDLSD ILASIDGQIE KAREEALSRK EILDKVDKWR HAKEEETWLD DYEKDENRFS
401: AVRGAHKNLK RAEKARSLIS KIPAMVDVLT TKVKAWEKER GVPFLCDKQP LLQTLEDDIV IRAQREEEKR QFREQKRLQG QLATEKEAKY GSKSAKKKPL
501: GQSLNTDNVT KTPIGRRIGN TPGRSVTSGG KDYRGNAVIP LNYVALQKDD

Arabidopsis Description

MAP65-565-kDa microtubule-associated protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVJ3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.