CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX89081	Canola	cytosol	95.61	95.34
AT3G60840.1	Thale cress	cytosol	83.48	84.34
VIT_15s0048g00860.t01	Wine grape	cytosol, nucleus, plasma membrane	40.79	46.58
GSMUA_Achr1P02510_001	Banana	cytosol	45.47	46.07
GSMUA_Achr5P11340_001	Banana	cytosol	44.59	45.73
GSMUA_Achr5P10040_001	Banana	nucleus	41.81	45.11
CDX86911	Canola	nucleus	34.5	43.78
CDY00270	Canola	nucleus	34.5	43.78
Zm00001d030420_P001	Maize	cytosol	14.62	43.67
CDX87240	Canola	nucleus	33.19	41.96
CDY16786	Canola	nucleus	33.19	41.8
CDX89305	Canola	cytosol	34.65	41.65
Zm00001d006888_P001	Maize	cytosol	16.23	41.57
CDY14300	Canola	nucleus	35.23	41.41
TraesCS3D01G264700.2	Wheat	cytosol	41.67	41.3
TraesCS3B01G297900.1	Wheat	cytosol	41.67	41.3
TraesCS3A01G264600.1	Wheat	cytosol	41.52	41.22
Zm00001d011615_P001	Maize	cytosol, nucleus, plastid	42.4	41.13
OQU87349	Sorghum	golgi, vacuole	42.69	40.84
TraesCS1A01G378900.1	Wheat	cytosol	40.2	40.62
TraesCS1D01G386100.1	Wheat	cytosol	40.35	40.53
KRH40591	Soybean	nucleus	41.52	40.51
CDY17313	Canola	cytosol	34.65	40.51
CDY19902	Canola	cytosol	34.65	40.51
TraesCS1B01G400200.1	Wheat	cytosol	40.2	40.38
CDY17624	Canola	nucleus	35.67	40.13
CDY20777	Canola	cytosol	34.06	39.56
CDY33748	Canola	cytosol	34.5	39.53
CDY06596	Canola	cytosol	33.77	39.22
HORVU1Hr1G083810.7	Barley	cytosol	39.18	39.18
CDY15798	Canola	endoplasmic reticulum, golgi	23.98	38.86
Zm00001d043831_P001	Maize	cytosol, mitochondrion	41.67	38.83
Os02t0126300-01	Rice	plasma membrane	31.58	38.64
CDX81663	Canola	cytosol	33.77	38.63
CDY03090	Canola	nucleus	34.94	38.49
TraesCSU01G016800.1	Wheat	nucleus	30.7	38.18
TraesCS6B01G111900.1	Wheat	nucleus	30.41	37.89
TraesCS6A01G089500.2	Wheat	nucleus	30.26	37.77
HORVU3Hr1G063620.1	Barley	plastid	41.08	37.67
Solyc01g091380.2.1	Tomato	plastid	40.94	37.63
CDY36737	Canola	nucleus	34.65	37.62
Os05t0552900-01	Rice	cytosol	39.91	37.35
PGSC0003DMT400033224	Potato	nucleus	40.79	36.95
CDY12006	Canola	cytosol	34.5	36.65
EES06214	Sorghum	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	30.7	35.9
CDY18372	Canola	nucleus	30.41	35.25
Zm00001d053956_P001	Maize	nucleus	30.7	35.23
CDX94287	Canola	nucleus	34.06	35.2
CDX93308	Canola	nucleus	30.26	35.14
Zm00001d015096_P002	Maize	nucleus	30.7	34.37
CDY27637	Canola	cytosol	25.88	31.05
CDX84899	Canola	extracellular, nucleus, plastid	26.02	31.01
CDX97365	Canola	nucleus	35.23	29.75
Zm00001d046884_P001	Maize	plastid	19.3	27.5
CDY09401	Canola	endoplasmic reticulum, golgi, plasma membrane	20.03	24.08

Protein Annotations

Gene3D:1.20.58.1520	MapMan:35.1	GO:A0A078JAV8	UniProt:A0A078JAV8	EnsemblPlants:CDY62713	ProteinID:CDY62713
ProteinID:CDY62713.1	ncoils:Coil	GO:GO:0000226	GO:GO:0000910	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0007049	GO:GO:0008017	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043
EnsemblPlantsGene:GSBRNA2T00037514001	InterPro:MAP65_Ase1_PRC1	PFAM:PF03999	PANTHER:PTHR19321	PANTHER:PTHR19321:SF7	UniParc:UPI0004EEF5F6
SEG:seg	:	:	:	:	:

Description

BnaC04g55380DBnaC04g55380D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JAV8]

Coordinates

chrLK034181:+:3811..6850

Molecular Weight (calculated)

77154.3 Da

IEP (calculated)

7.302

GRAVY (calculated)

-0.659

Length

684 amino acids

Sequence
(BLAST)

001: MIRNSTEQFS RIETTCGLLL RQLQEIWSEM GENEDEKDAA LADIEKECLL VYKRKVEEAS RCKANLLKEI ALGRAEIAAI GSSMGGQEIH CNGRVGENLK
101: EELENVTVQL EELRRKKAER MNRFKEVIDQ LLSLSFQLGD STDYLKKLGA EEADLSLHKL EDLRRQLAEL QNEKSKRLEE VERLLETLKL LCSVLGEDLK
201: DLTRGIHPSL VDSNTRDVSR STLDKLDFMI GNLRGVKLQR MHKIQDLAVS LLELWNLLDT PAEEQKTFHN VTCSIALSES EITEANILSV ASIKNVEDEV
301: IRLSKLKITK IKEVILRKKL ELEEISRKVH MAPQVLKSEN FSIEAIESGV KDPEQLLEQI DSEIAKVREE SSSRKEILEK VEKWMTACEE ESWLEEYNRD
401: DNRYNAGRGA HLTLKRAEKA RILVNKLPGM VETLTAKVNA WEDERGHAFL YDGVRVLSML EQYKTLWEEK EFEKQRQRDL KKLHGQHITE QEALYGSKPS
501: PGKSGKKPLR TALPSSAMNR KLSLGGATLQ SSKPEKATLN SKKTTYYDQN APSRRESTIP NPSGRRNSEL PGRLRAKNVP GAGKAVMNKG RSPMLRKPLS
601: PVTSNILNSP EDHKDAYPTK SSPKTNEENR GAAVPISEPT TPAASVAMSE ATTPFTPASK AVKKRLDNAE GVEYSFEEVR AGFC

Best Arabidopsis Sequence Match ( AT3G60840.1 )
(BLAST)

001: MIRNSTEQFS RIETTCGLLL RQLQEIWNEM GETEDEKDAS LADIEKECLS VYKRKVEEAS RGKANLLKEI AVGRAEIAAI GSSMGGQEIH SNSRLGENLK
101: EELENVNVQL DGLRKRKAER MIRFNEVIDQ LLKLSLQLGN PTDYLKKFAA EETDLSLQRL EELRSQLGEL QNEKSKRLEE VECLLKTLNS LCSVLGEDFK
201: GMIRGIHSSL VDSNTRDVSR STLDKLDMMI VNLREAKLQR MQKVQDLAVS LLELWNLLDT PAEEQKIFHN VTCSIALTES EITEANILSV ASIKRVEDEV
301: IRLSKIKITK IKEVILRKRL ELEEISRKMH MATEVLKSEN FSVEAIESGV KDPEQLLEQI DSEIAKVKEE ASSRKEILEK VEKWMSACEE ESWLEEYNRD
401: DNRYNAGRGA HLTLKRAEKA RLLVNKLPGM VEALTAKVTA WENERGNEFL YDGVRVLSML GQYKTVWEEK EHEKQRQRDM KKLHGQLITE QEALYGSKPS
501: PNKSGKKPLR TPVNAAMNRK LSLGGAMLHQ SLKHEKATLN SKRTKYYDQN ATSRRDSALP TLSGRRNSEL PGRIRSKNVP VAGKAARSPM LRKPLSPVTS
601: NILNSPEDHH KDAYTTKERI LTPKTNEEKK RAVPTTPAAS VAMTEATTPF TPAVEKRMDE EDVIVEYSFE EVRAGFC

Arabidopsis Description

MAP65-465-kDa microtubule-associated protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LZY0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.