CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY14300	Canola	nucleus	70.25	97.77
CDX89305	Canola	cytosol	64.2	91.39
AT4G26760.1	Thale cress	cytosol	64.44	90.31
CDY19902	Canola	cytosol	58.27	80.68
CDY17313	Canola	cytosol	58.27	80.68
CDX94287	Canola	nucleus	63.95	78.25
CDY20777	Canola	cytosol	56.42	77.59
CDY06596	Canola	cytosol	56.42	77.59
KRH73815	Soybean	cytosol	53.83	74.91
CDY36737	Canola	nucleus	58.15	74.76
KRH14311	Soybean	endoplasmic reticulum	53.58	73.56
CDY12006	Canola	cytosol	57.78	72.67
KRH14315	Soybean	cytosol, endoplasmic reticulum	51.6	70.13
KRG98677	Soybean	cytosol	37.53	69.25
VIT_19s0090g01230.t01	Wine grape	endoplasmic reticulum	47.41	68.57
PGSC0003DMT400057428	Potato	cytosol	49.01	68.33
Solyc07g064970.2.1	Tomato	nucleus	49.01	68.33
PGSC0003DMT400033471	Potato	cytosol	47.9	67.6
GSMUA_Achr3P13450_001	Banana	cytosol	49.14	67.57
GSMUA_Achr7P06200_001	Banana	cytosol	48.77	67.18
GSMUA_Achr4P19380_001	Banana	cytosol	48.52	67.06
GSMUA_Achr4P03890_001	Banana	cytosol	48.4	66.89
Solyc12g014490.1.1	Tomato	cytosol	46.54	66.49
KRH46253	Soybean	nucleus	25.19	64.76
Os06t0308300-01	Rice	golgi	45.31	63.72
EER89674	Sorghum	cytosol	45.56	62.33
Os06t0611000-01	Rice	nucleus	44.57	62.13
TraesCS7D01G224800.1	Wheat	cytosol	44.44	61.86
TraesCS7B01G304900.2	Wheat	cytosol	44.2	61.72
TraesCS7D01G399400.1	Wheat	cytosol	43.83	61.21
TraesCS7A01G223100.1	Wheat	cytosol, nucleus, plastid	44.57	60.88
HORVU7Hr1G094860.1	Barley	cytosol	43.46	60.69
TraesCS7A01G405500.1	Wheat	cytosol	43.33	60.52
EER88641	Sorghum	cytosol	42.72	59.66
HORVU7Hr1G045770.7	Barley	endoplasmic reticulum	44.32	58.66
TraesCS7B01G190000.1	Wheat	endoplasmic reticulum, golgi	44.44	58.54
TraesCS6D01G263300.1	Wheat	cytosol	41.6	57.41
Zm00001d037413_P002	Maize	cytosol	44.44	57.05
TraesCS6A01G282800.1	Wheat	cytosol	41.11	56.73
Os02t0720200-01	Rice	cytosol	41.23	56.71
HORVU6Hr1G070900.6	Barley	cytosol	40.99	56.27
TraesCS6B01G311200.1	Wheat	cytosol	40.86	56.01
Zm00001d045864_P004	Maize	mitochondrion	43.95	52.58
CDX81663	Canola	cytosol	32.47	43.98
CDY17624	Canola	nucleus	32.84	43.75
CDY33748	Canola	cytosol	32.1	43.55
CDX86911	Canola	nucleus	28.15	42.3
CDY00270	Canola	nucleus	28.02	42.12
CDY03090	Canola	nucleus	31.73	41.38
CDX87240	Canola	nucleus	27.41	41.04
CDX84899	Canola	extracellular, nucleus, plastid	28.64	40.42
CDY16786	Canola	nucleus	27.04	40.33
CDX93308	Canola	nucleus	29.26	40.24
CDY27637	Canola	cytosol	28.27	40.18
CDY18372	Canola	nucleus	29.26	40.17
CDY15798	Canola	endoplasmic reticulum, golgi	20.37	39.1
CDY62713	Canola	cytosol	29.75	35.23
CDX89081	Canola	cytosol	29.01	34.26
CDY09401	Canola	endoplasmic reticulum, golgi, plasma membrane	16.3	23.2

Protein Annotations

Gene3D:1.20.58.1520	Gene3D:1.25.40.270	MapMan:13.4.3.6	MapMan:22.5.4.4.2	GO:A0A078E5L6	EnsemblPlants:CDX97365
ProteinID:CDX97365	ProteinID:CDX97365.1	ncoils:Coil	GO:GO:0000226	GO:GO:0000910	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0007049	GO:GO:0008017	GO:GO:0008150	GO:GO:0009987
GO:GO:0016043	EnsemblPlantsGene:GSBRNA2T00104462001	InterPro:IPR023175	InterPro:MAP65_Ase1_PRC1	PFAM:PF03999	PFAM:PF04652
PANTHER:PTHR19321	PANTHER:PTHR19321:SF15	UniParc:UPI0004EF2254	InterPro:VPS_Vta1/CALS_N	SEG:seg	:

Description

BnaC08g12300D

Coordinates

chrLK031899:-:54331..58855

Molecular Weight (calculated)

90886.5 Da

IEP (calculated)

5.267

GRAVY (calculated)

-0.722

Length

810 amino acids

Sequence
(BLAST)

001: MAVTEAENPL LGEITCGTLL QKLQEIWDEV GESDEERDKL LLQIEEECLN VYKHKVELAA KSRAELLQTL SDANVELSNL TTALGDKSYI GIPDKTSGTI
101: KEQLSAIAPA LEQLWQQKEE RVREFSDVQS QIQKICEEIA GGLSNGPHVV DESDLSLKRL DDYKSKLQEL QKEKSDRLNK VLEFVSTVHD LCSVLGLDFL
201: STVTEVHPSL DEANGVHAKS ISNETLSRLA TTVLTLKEDK KQRLEKLQEL AIQLTELWNL MDTPDEEREL FNHVTCYISA SVHEVTVAGA LALDLIEQAE
301: VEVDRLDKLK ASRMKEIAFK KQSELEEIYA RAHIEIKPEV VRERIMSLID AGNTEPAELL AEMDSQIAKA KEEAFSRKEI LDRVEKWMSA CEEESWLEDY
401: NRDQNRYSAS RGAHLNLKRA EKARILVSKI TAMVDTLVAK TRAWEEDNSM SFEYDGVPLL AMLDEYTMLR QEREEEKRRL KEQKKQQEQP HTEQDSAFGS
501: KPSPARPVSA KKPVGTRANG GGGGGGANET PRRLSMNSNG SKSKRDSLNK LTSPSKLVAI SKEEAASSPP VSCPDPLRGR GERERERRTH VEPKRTSLPY
601: LQRADELQKH EPLVGYYCRL YAMERGLKNQ QSDRTKTTNS TLSNQLEKQQ YLYIGTQAWG FFLHVDDVHP PPPSSYPSND LIPPPTGPSN SPYHQDLPPS
701: QNYPSHEPSP ISLPNFQSYP SFSDSSLPAT PSSTHYQNPE SYYSAPSSTS FTSSPPYSSS NGRNNIATVL EHAPSPAQKY HYDSSYQPGP DKIAEAHKAA
801: RFAVGAFSFR

Best Arabidopsis Sequence Match ( AT4G26760.1 )
(BLAST)

001: MAVTEAENPL LGEITCGTLL QKLQEIWDEV GESDEERDKL LLQIEEECLN VYKKKVELAA KSRAELLQTL SDATVELSNL TTALGEKSYI DIPDKTSGTI
101: KEQLSAIAPA LEQLWQQKEE RVRAFSDVQS QIQKICEEIA GGLNNGPHVV DETDLSLKRL DDFQRKLQEL QKEKSDRLQK VLEFVSTVHD LCAVLRLDFL
201: STVTEVHPSL DEANGVQTKS ISNETLARLA KTVLTLKEDK MQRLKKLQEL ATQLTDLWNL MDTSDEEREL FDHVTSNISA SVHEVTASGA LALDLIEQAE
301: VEVDRLDQLK SSRMKEIAFK KQSELEEIYA RAHIEIKPEV VRERIMSLID AGNTEPTELL ADMDSQIAKA KEEAFSRKEI LDRVEKWMSA CEEESWLEDY
401: NRDQNRYSAS RGAHLNLKRA EKARILVSKI TAMVDTLIAK TRAWEEENSM SFEYDGVPLL AMLDEYTMLR QEREDEKRRL KEQKKQQEQP HTDQESAFGS
501: KPSPARPVSA KKPVGTRVNG GGLNETPMRR LSMNSNQNGS KSKRDSLNKI ASPSNIVANT KDDAASPVSR ADPVMASP

Arabidopsis Description

MAP65-2MAP65-2 [Source:UniProtKB/TrEMBL;Acc:A0A178V4W3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.