Factsheet for GSMUA_Achr4P19380_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P06200_001	Banana	cytosol	90.1	89.8
GSMUA_Achr3P13450_001	Banana	cytosol	87.37	86.93
GSMUA_Achr4P03890_001	Banana	cytosol	81.06	81.06
KRH73815	Soybean	cytosol	75.94	76.46
PGSC0003DMT400057428	Potato	cytosol	74.23	74.87
KRH14311	Soybean	endoplasmic reticulum	75.26	74.75
Solyc07g064970.2.1	Tomato	nucleus	74.06	74.7
VIT_19s0090g01230.t01	Wine grape	endoplasmic reticulum	70.65	73.93
PGSC0003DMT400033471	Potato	cytosol	70.99	72.47
Solyc12g014490.1.1	Tomato	cytosol	69.11	71.43
KRH14315	Soybean	cytosol, endoplasmic reticulum	72.01	70.81
KRH46253	Soybean	nucleus	38.05	70.79
TraesCS7D01G399400.1	Wheat	cytosol	69.45	70.17
Bra028986.1-P	Field mustard	cytosol	70.14	69.9
Os06t0611000-01	Rice	nucleus	69.28	69.88
HORVU7Hr1G094860.1	Barley	cytosol	69.11	69.83
TraesCS7B01G304900.2	Wheat	cytosol	69.11	69.83
TraesCS7A01G405500.1	Wheat	cytosol	68.94	69.66
CDY17313	Canola	cytosol	69.45	69.57
Bra002922.1-P	Field mustard	cytosol	69.45	69.57
CDY19902	Canola	cytosol	69.28	69.4
KRG98677	Soybean	cytosol	51.88	69.25
EER88641	Sorghum	cytosol	67.92	68.62
Bra035564.1-P	Field mustard	cytosol	68.43	68.31
CDY20777	Canola	cytosol	68.43	68.08
AT5G55230.2	Thale cress	cytosol	71.33	67.86
AT4G26760.1	Thale cress	cytosol	66.72	67.65
CDY14300	Canola	nucleus	67.06	67.53
CDX89305	Canola	cytosol	65.53	67.49
Bra026405.1-P	Field mustard	cytosol	65.53	67.49
Bra010428.1-P	Field mustard	cytosol	66.89	67.35
CDY06596	Canola	cytosol	67.24	66.89
CDY36737	Canola	nucleus	70.82	65.87
CDY12006	Canola	cytosol	69.97	63.66
CDX94287	Canola	nucleus	65.02	57.55
GSMUA_Achr9P17360_001	Banana	cytosol	51.37	51.81
CDX97365	Canola	nucleus	67.06	48.52
GSMUA_Achr6P23030_001	Banana	cytosol	45.39	47.33
GSMUA_Achr11P...	Banana	nucleus	45.22	46.09
GSMUA_Achr10P...	Banana	nucleus	45.22	43.87
GSMUA_Achr6P04350_001	Banana	cytosol	46.59	43.33
GSMUA_Achr5P11340_001	Banana	cytosol	48.98	43.03
GSMUA_Achr1P02510_001	Banana	cytosol	48.12	41.78
GSMUA_Achr6P05980_001	Banana	cytosol	41.98	41.34
GSMUA_Achr5P10040_001	Banana	nucleus	44.71	41.32
GSMUA_Achr2P21660_001	Banana	endoplasmic reticulum, extracellular	46.59	28.8

Protein Annotations

EnsemblPlants:GSMUA_Achr4P19380_001	EnsemblPlants:GSMUA_Achr4T19380_001	EnsemblPlantsGene:GSMUA_Achr4G19380_001	Gene3D:1.20.58.1520	GO:GO:0000226	GO:GO:0000910
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0007049	GO:GO:0008017	GO:GO:0008150
GO:GO:0009987	GO:GO:0016043	InterPro:MAP65_Ase1_PRC1	ncoils:Coil	PANTHER:PTHR19321	PANTHER:PTHR19321:SF15
PFAM:PF03999	SEG:seg	UniParc:UPI000294C172	UniProt:M0SQA1	MapMan:13.4.3.6	:

Description

65-kDa microtubule-associated protein 1 [Source:GMGC_GENE;Acc:GSMUA_Achr4G19380_001]

Coordinates

chr4:+:20402441..20408774

Molecular Weight (calculated)

65885.5 Da

IEP (calculated)

4.852

GRAVY (calculated)

-0.578

Length

586 amino acids

Sequence
(BLAST)

001: MAVSDTQNPL LGETTCGSLL QQLQLIWDEV GESDEERDRM LLQLEQECLE VYKRKVEQAS KTRVLLLQSL ADSKAELLRL LSALGEKSFD GIPDKSSGTI
101: KEQLAAIAPL LEQLCKQKED RIREFADVQL QIEKIRGEIA GTSIIGEQMR TPTVDEEDLS LKKLDEYQQQ LQELQKEKSD RLHKILDFVS TVHDLCAVLG
201: LDFFSTITEV HPSLNDSVSV QSKSISNDTL SKLSGMVMVL KEDKKMRLKK LQELAAQLTD LWNLMDTPME EQSLFSHVTS NMSATVDEVT VPGALALDLI
301: EQAEVEVERL DQLKASKMKE IAFKKQTELE DIYTHAHVDI DSAAARDKIL ALIDSGNVEP SDLLAEMDNQ ILKAKEEAMS RKEILEKVEK WMSACEEESW
401: LEDYNRDDNR YNSSRGAHLN LKRAEKARVL VNKIPALVDM LVAKTRTWEE DRGMPFTYDG VPLLAMLDEY TMLRQEREGE KRKQRDQKRI HEQLATEQEA
501: LFGSRPSPAR PLGPKKVVGP RPNGSTSNGT PSRRLSLNAH QGSANGVRSM SRDGKRDSNR PAAPVNYVKE EAASQMSATE QAPASP

Best Arabidopsis Sequence Match ( AT5G55230.1 )
(BLAST)

001: MAVTDTESPH LGEITCGTLL EKLQEIWDEV GESDDERDKL LLQIEQECLD VYKRKVEQAA KSRAELLQTL SDANAELSSL TMSLGDKSLV GIPDKSSGTI
101: KEQLAAIAPA LEQLWQQKEE RVREFSDVQS QIQKICGDIA GGLSNEVPIV DESDLSLKKL DDFQSQLQEL QKEKSDRLRK VLEFVSTVHD LCAVLGLDFL
201: STVTEVHPSL DEDTSVQSKS ISNETLSRLA KTVLTLKDDK KQRLQKLQEL ATQLIDLWNL MDTPDEEREL FDHVTCNISS SVDEVTVPGA LARDLIEQAE
301: VEVDRLDQLK ASRMKEIAFK KQSELEEIYA RAHVEVNPES ARERIMSLID SGNVEPTELL ADMDSQISKA KEEAFSRKDI LDRVEKWMSA CEEESWLEDY
401: NRDQNRYSAS RGAHLNLKRA EKARILVSKI PAMVDTLVAK TRAWEEEHSM SFAYDGVPLL AMLDEYGMLR QEREEEKRRL REQKKVQEQP HVEQESAFST
501: RPSPARPVSA KKTVGPRANN GGANGTHNRR LSLNANQNGS RSTAKEAGRR ETLNRPAAPT NYVAISKEEA ASSPVSGAAD HQVPASP

Arabidopsis Description

ATMAP65-1Microtubule-associated proteins 65-1 [Source:UniProtKB/TrEMBL;Acc:F4K3E4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.